| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | W3110S.gb | 1,771,192 | (G)7→6 | coding (405/1113 nt) | ydiK → | predicted inner membrane protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | W3110S.gb | 1,771,186 | 0 | G | . | 80.0% | 102.8 / 36.8 | 45 | coding (399/1113 nt) | ydiK | predicted inner membrane protein |
| Reads supporting (aligned to +/- strand): ref base G (7/2); new base . (0/36); total (7/38) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.93e-07 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.05e-01 | |||||||||||
AATACCATTCCGGTGATTGGCGCGAAGCTGTATGCAGGCTGGCACAACTTGCTGGATATGGGGGGGACGGCGATCATGGCGAAAGTCCGCCCTTATATTGGCACCACC > W3110S.gb/1771127‑1771234 | aaTACCATTCCGGTGATTGGCGCGAAGCTGTATGCAGGCTGGCACAACTTGCTGGATATgggggg > 1:2332427/1‑65 (MQ=255)aaTACCATTCCGGTGATTGGCGCGAAGCTGTATGCAGGCTGGCACAACTTGCTGGATATgggggg > 1:1713420/1‑65 (MQ=255)aaTACCATTCCGGTGATTGGCGCGAAGCTGTATGCAGGCTGGCACAACTTGCTGGATATgggggg > 1:1744551/1‑65 (MQ=255)aaTACCATTCCGGTGATTGGCGCGAAGCTGTATGCAGGCTGGCACAACTTGCTGGATATgggggg > 1:430101/1‑65 (MQ=255)aaTACCATTCCGGTGATTGGCGCGAAGCTGTATGCAGGCTGGCACAACTTGCTGGATATgggggg > 1:553879/1‑65 (MQ=255)aaTACCATTCCGGTGATTGGCGCGAAGCTGTATGCAGGCTGGCACAACTTGCTGGATATgggggg > 1:1567522/1‑65 (MQ=255)aaTACCATTCCGGTGATTGGCGCGAAGCTGTATGCAGGCTGGCACAACTTGCTGGATATgggggg > 1:388348/1‑65 (MQ=255)aaTACCATTCCGGTGATTGGCGCGAAGCTGTATGCAGGCTGGCACAACTTGCTGGATATgggggg > 1:315803/1‑65 (MQ=255)aaTACCATTCCGGTGATTGGCGCGAAGCTGTATGCAGGCTGGCACAACTTGCTGGATATgggggg > 1:2230266/1‑65 (MQ=255)aaTACCATTCCGGTGATTGGCGCGAAGCTGTATGCAGGCTGGCACAACTTGCTGGATATgggggg > 1:690163/1‑65 (MQ=255)aaTACCATTCCGGTGATTGGCGCGAAGCTGTATGCAGGCTGGCACAACTTGCTGGATATgggggg > 1:2264077/1‑65 (MQ=255)aaTACCATTCCGGTGATTGGCGCGAAGCTGTATGCAGGCTGGCACAACTTGCTGGATATgggggg > 1:2515640/1‑65 (MQ=255)aaTACCATTCCGGTGATTGGCGCGAAGCTGTATGCAGGCTGGCACAACTTGCTGGATATgggggg > 1:2355478/1‑65 (MQ=255)aaTACCATTCCGGTGATTGGCGCGAAGCTGTATGCAGGCTGGCACAACTTGCTGGATATgggggg > 1:1308554/1‑65 (MQ=255)aaTACCATTCCGGTGATTGGCGCGAAGCTGTATGCAGGCTGGCACAACTTGCTGGATATgggggg > 1:840708/1‑65 (MQ=255)aaTACCATTCCGGTGATTGGCGCGAAGCTGTATGCAGGCTGGCACAACTTGCTGGATATgggggg > 1:1200889/1‑65 (MQ=255)aaTACCATTCCGGTGATTGGCGCGAAGCTGTATGCAGGCTGGCACAACTTGCTGGATATgggggg > 1:954639/1‑65 (MQ=255)aaTACCATTCCGGTGATTGGCGCGAAGCTGTATGCAGGCTGGCACAACTTGCTGGATATggggg > 1:802564/1‑64 (MQ=255)aaTACCATTCCGGTGATTGGCGCGAAGCTGTATGCAGGCTGGCACAACTTGCTGGATATg > 1:1113462/1‑60 (MQ=255) ggCGCGAAGCTGTATGCAGGCTGGCACAACTTGCTGGATATGGGGGGGACgg < 1:1109140/52‑1 (MQ=255) ggCGCGAAGCTGTATGCAGGCTGGCACAACTTGCTGGATATGGGGGGGACgg < 1:1517982/52‑1 (MQ=255) cgAAGCTGTATGCAGGCTGGCACAACTTGCTGGATATGGGGGGGACGGCGATCATGGCGAAAGt > 1:1310848/1‑64 (MQ=255) cgAAGCTGTATGCAGGCTGGCACAACTTGCTGGATATGGGGGGGACGGCGATCATGGCGAAAGTc > 1:1825594/1‑65 (MQ=255) aGCTGTATGCAGGCTGGCACAACTTGCTGGATAT‑GGGGGGACGGCGATCATGGCGAAAGTCCGcc < 1:528743/65‑1 (MQ=255) aGCTGTATGCAGGCTGGCACAACTTGCTGGATAT‑GGGGGGACGGCGATCATGGCGAAAGTCCGcc < 1:472120/65‑1 (MQ=255) aGCTGTATGCAGGCTGGCACAACTTGCTGGATAT‑GGGGGGACGGCGATCATGGCGAAAGTCCGcc < 1:461470/65‑1 (MQ=255) aGCTGTATGCAGGCTGGCACAACTTGCTGGATAT‑GGGGGGACGGCGATCATGGCGAAAGTCCGcc < 1:456039/65‑1 (MQ=255) aGCTGTATGCAGGCTGGCACAACTTGCTGGATAT‑GGGGGGACGGCGATCATGGCGAAAGTCCGcc < 1:442885/65‑1 (MQ=255) aGCTGTATGCAGGCTGGCACAACTTGCTGGATAT‑GGGGGGACGGCGATCATGGCGAAAGTCCGcc < 1:553875/65‑1 (MQ=255) aGCTGTATGCAGGCTGGCACAACTTGCTGGATAT‑GGGGGGACGGCGATCATGGCGAAAGTCCGcc < 1:319695/65‑1 (MQ=255) aGCTGTATGCAGGCTGGCACAACTTGCTGGATAT‑GGGGGGACGGCGATCATGGCGAAAGTCCGcc < 1:555690/65‑1 (MQ=255) aGCTGTATGCAGGCTGGCACAACTTGCTGGATAT‑GGGGGGACGGCGATCATGGCGAAAGTCCGcc < 1:680014/65‑1 (MQ=255) aGCTGTATGCAGGCTGGCACAACTTGCTGGATAT‑GGGGGGACGGCGATCATGGCGAAAGTCCGcc < 1:829069/65‑1 (MQ=255) aGCTGTATGCAGGCTGGCACAACTTGCTGGATAT‑GGGGGGACGGCGATCATGGCGAAAGTCCGcc < 1:831639/65‑1 (MQ=255) aGCTGTATGCAGGCTGGCACAACTTGCTGGATAT‑GGGGGGACGGCGATCATGGCGAAAGTCCGcc < 1:2388501/65‑1 (MQ=255) aGCTGTATGCAGGCTGGCACAACTTGCTGGATAT‑GGGGGGACGGCGATCATGGCGAAAGTCCGcc < 1:985787/65‑1 (MQ=255) aGCTGTATGCAGGCTGGCACAACTTGCTGGATAT‑GGGGGGACGGCGATCATGGCGAAAGTCCGcc < 1:2276584/65‑1 (MQ=255) aGCTGTATGCAGGCTGGCACAACTTGCTGGATAT‑GGGGGGACGGCGATCATGGCGAAAGTCCGcc < 1:1253310/65‑1 (MQ=255) aGCTGTATGCAGGCTGGCACAACTTGCTGGATAT‑GGGGGGACGGCGATCATGGCGAAAGTCCGcc < 1:1318948/65‑1 (MQ=255) aGCTGTATGCAGGCTGGCACAACTTGCTGGATAT‑GGGGGGACGGCGATCATGGCGAAAGTCCGcc < 1:1341994/65‑1 (MQ=255) aGCTGTATGCAGGCTGGCACAACTTGCTGGATAT‑GGGGGGACGGCGATCATGGCGAAAGTCCGcc < 1:1352901/65‑1 (MQ=255) aGCTGTATGCAGGCTGGCACAACTTGCTGGATAT‑GGGGGGACGGCGATCATGGCGAAAGTCCGcc < 1:1362746/65‑1 (MQ=255) aGCTGTATGCAGGCTGGCACAACTTGCTGGATAT‑GGGGGGACGGCGATCATGGCGAAAGTCCGcc < 1:138989/65‑1 (MQ=255) aGCTGTATGCAGGCTGGCACAACTTGCTGGATAT‑GGGGGGACGGCGATCATGGCGAAAGTCCGcc < 1:141884/65‑1 (MQ=255) aGCTGTATGCAGGCTGGCACAACTTGCTGGATAT‑GGGGGGACGGCGATCATGGCGAAAGTCCGcc < 1:1616389/65‑1 (MQ=255) aGCTGTATGCAGGCTGGCACAACTTGCTGGATAT‑GGGGGGACGGCGATCATGGCGAAAGTCCGcc < 1:1641930/65‑1 (MQ=255) aGCTGTATGCAGGCTGGCACAACTTGCTGGATAT‑GGGGGGACGGCGATCATGGCGAAAGTCCGcc < 1:1796314/65‑1 (MQ=255) aGCTGTATGCAGGCTGGCACAACTTGCTGGATAT‑GGGGGGACGGCGATCATGGCGAAAGTCCGcc < 1:1814098/65‑1 (MQ=255) aGCTGTATGCAGGCTGGCACAACTTGCTGGATAT‑GGGGGGACGGCGATCATGGCGAAAGTCCGcc < 1:1872772/65‑1 (MQ=255) aGCTGTATGCAGGCTGGCACAACTTGCTGGATAT‑GGGGGGACGGCGATCATGGCGAAAGTCCGcc < 1:1981632/65‑1 (MQ=255) aGCTGTATGCAGGCTGGCACAACTTGCTGGATAT‑GGGGGGACGGCGATCATGGCGAAAGTCCGcc < 1:2313742/65‑1 (MQ=255) aGCTGTATGCAGGCTGGCACAACTTGCTGGATAT‑GGGGGGACGGCGATCATGGCGAAAGTCCGcc < 1:2269558/65‑1 (MQ=255) aGCTGTATGCAGGCTGGCACAACTTGCTGGATAT‑GGGGGGACGGCGATCATGGCGAAAGTCCGcc < 1:2195940/65‑1 (MQ=255) aGCTGTATGCAGGCTGGCACAACTTGCTGGATAT‑GGGGGGACGGCGATCATGGCGAAAGTCCGcc < 1:2027981/65‑1 (MQ=255) gCTGTATGCAGGCTGGCACAACTTGCTGGATAT‑GGGGGGACGGCGATCATGGCGAAAGTCCGcc < 1:17607/64‑1 (MQ=255) gCTGTATGCAGGCTGGCACAACTTGCTGGATAT‑GGGGGGACGGCGATCATGGCGAAAGTCCGcc < 1:1109044/64‑1 (MQ=255) gCTGTATGCAGGCTGGCACAACTTGCTGGATAT‑GGGGGGACGGCGATCATGGCGAAAGTCCGcc < 1:1136162/64‑1 (MQ=255) gCTGTATGCAGGCTGGCACAACTTGCTGGATAT‑GGGGGGACGGCGATCATGGCGAAAGTCCGcc < 1:808366/64‑1 (MQ=255) gCTGTATGCAGGCTGGCACAACTTGCTGGATAT‑GGGGGGACGGCGATCATGGCGAAAGTCCGcc < 1:640994/64‑1 (MQ=255) actaCTTGCTGGATATGGGGGGGACGGCGATCATGGCGAAAGTCCGCCCTTATATTGGcaccacc > 1:327119/4‑65 (MQ=255) acaACTTGCTGGATATGGGGGGGACGGCGATCATGGCGAAAGTCCGCCCTTATATTGGcaccacc > 1:782018/1‑65 (MQ=255) acaACTTGCTGGATATGGGGGGGACGGCGATCATGGCGAAAGTCCGCCCTTATATTGGcaccacc > 1:329499/1‑65 (MQ=255) acaACTTGCTGGATATGGGGGGGACGGCGATCATGGCGAAAGTCCGCCCTTATATTGGcaccacc > 1:2023252/1‑65 (MQ=255) acaACTTGCTGGATATGGGGGGGACGGCGATCATGGCGAAAGTCCGCCCTTATATTGGcaccacc > 1:1567775/1‑65 (MQ=255) | AATACCATTCCGGTGATTGGCGCGAAGCTGTATGCAGGCTGGCACAACTTGCTGGATATGGGGGGGACGGCGATCATGGCGAAAGTCCGCCCTTATATTGGCACCACC > W3110S.gb/1771127‑1771234 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |