Predicted mutation
evidence seq id position mutation annotation gene description
RA W3110S.gb 547,835 +G pseudogene (255/261 nt)
pseudogene (255/1259 nt)
ylbE →
ylbE →
ECK0512:JW0507:b4507; hypothetical protein, N‑ter fragment
ECK0512:JW0508+JW0507:b4572; hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*W3110S.gb547,8311.G99.1% 425.7 / ‑4.7 111pseudogene (251/261 nt)
pseudogene (251/1259 nt)
ylbE
ylbE
ECK0512:JW0507:b4507; hypothetical protein, N‑ter fragment
ECK0512:JW0508+JW0507:b4572; hypothetical protein
Reads supporting (aligned to +/- strand):  ref base . (0/0);  major base G (31/79);  minor base T (1/0);  total (32/79)
Fisher's exact test for biased strand distribution p-value = 2.88e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.87e-01

Only 100 of 111 total aligned reads displayed.

TTCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGAAGTGAACTTCATTCCTTGTCACCATGTGAATGCCGTCG  >  W3110S.gb/547782‑547874
                                                  |                                           
ttCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCATGGGGAAGTGAACtt                               >  1:2208196/1‑65 (MQ=255)
ttCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGGAAGTGACCtt                               >  1:299336/1‑65 (MQ=255)
ttCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGGAAGTGAACtt                               >  1:1726054/1‑65 (MQ=255)
ttCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGGAAGTGAACtt                               >  1:173597/1‑65 (MQ=255)
ttCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGGAAGTGAACtt                               >  1:1722158/1‑65 (MQ=255)
ttCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGGAAGTGAACtt                               >  1:1406189/1‑65 (MQ=255)
ttCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGGAAGTGAACtt                               >  1:1890472/1‑65 (MQ=255)
ttCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGGAAGTGAACtt                               >  1:1992777/1‑65 (MQ=255)
ttCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGGAAGTGAACtt                               >  1:2010599/1‑65 (MQ=255)
ttCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGGAAGTGAACtt                               >  1:2232306/1‑65 (MQ=255)
ttCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGGAAGTGAACtt                               >  1:2303804/1‑65 (MQ=255)
ttCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGGAAGTGAACtt                               >  1:1628703/1‑65 (MQ=255)
ttCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGGAAGTGAACtt                               >  1:303662/1‑65 (MQ=255)
ttCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGGAAGTGAACtt                               >  1:426403/1‑65 (MQ=255)
ttCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGGAAGTGAACtt                               >  1:474339/1‑65 (MQ=255)
ttCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGGAAGTGAACtt                               >  1:582047/1‑65 (MQ=255)
ttCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGGAAGTGAACtt                               >  1:588948/1‑65 (MQ=255)
ttCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGGAAGTGAACtt                               >  1:699154/1‑65 (MQ=255)
ttCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGGAAGTGAACtt                               >  1:1057279/1‑65 (MQ=255)
ttCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGGAAGTGAACtt                               >  1:80975/1‑65 (MQ=255)
ttCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGGAAGTGAACtt                               >  1:837623/1‑65 (MQ=255)
ttCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGGAAGTGAACtt                               >  1:1005479/1‑65 (MQ=255)
ttCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGGAAGTGAACtt                               >  1:864975/1‑65 (MQ=255)
ttCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGGAAGTGAACt                                >  1:2319648/1‑64 (MQ=255)
ttCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGGAAGTGAACt                                >  1:140914/1‑64 (MQ=255)
    aaGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGGAAGTGAACTTCAtt                           >  1:2190988/1‑65 (MQ=255)
    aaGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGGAAGTGAACTTCAtt                           >  1:1609395/1‑65 (MQ=255)
    aaGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGGAAGTGAACTTCAtt                           >  1:1572544/1‑65 (MQ=255)
    aaGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGGAAGTGAACTTCAtt                           >  1:1291935/1‑65 (MQ=255)
               aaaGATGAAGCGCAGGCGCTGGCAATACTGTAGCAGGGGGAAGTGAACTTCATTCCTTGTCACCa                <  1:1802732/65‑1 (MQ=255)
               aaaGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGGAAGTGAAGTTCATTCCTTGTCACCa                <  1:1052768/65‑1 (MQ=255)
               aaaGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGGAAGTGAACTTCATTCCTTGtcatca                <  1:325632/65‑1 (MQ=255)
               aaaGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGGAAGTGAACTTCATTCCTTGTCACCa                <  1:366776/65‑1 (MQ=255)
               aaaGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGGAAGTGAACTTCATTCCTTGTCACCa                <  1:463078/65‑1 (MQ=255)
               aaaGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGGAAGTGAACTTCATTCCTTGTCACCa                <  1:329742/65‑1 (MQ=255)
               aaaGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGGAAGTGAACTTCATTCCTTGTCACCa                <  1:324774/65‑1 (MQ=255)
               aaaGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGGAAGTGAACTTCATTCCTTGTCACCa                <  1:1195198/65‑1 (MQ=255)
               aaaGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGGAAGTGAACTTCATTCCTTGTCACCa                <  1:1196138/65‑1 (MQ=255)
               aaaGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGGAAGTGAACTTCATTCCTTGTCACCa                <  1:2504436/65‑1 (MQ=255)
               aaaGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGGAAGTGAACTTCATTCCTTGTCACCa                <  1:2488510/65‑1 (MQ=255)
               aaaGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGGAAGTGAACTTCATTCCTTGTCACCa                <  1:2475177/65‑1 (MQ=255)
               aaaGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGGAAGTGAACTTCATTCCTTGTCACCa                <  1:1598847/65‑1 (MQ=255)
               aaaGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGGAAGTGAACTTCATTCCTTGTCACCa                <  1:2452461/65‑1 (MQ=255)
               aaaGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGGAAGTGAACTTCATTCCTTGTCACCa                <  1:2441664/65‑1 (MQ=255)
               aaaGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGGAAGTGAACTTCATTCCTTGTCACCa                <  1:2424010/65‑1 (MQ=255)
               aaaGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGGAAGTGAACTTCATTCCTTGTCACCa                <  1:421995/65‑1 (MQ=255)
               aaaGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGGAAGTGAACTTCATTCCTTGTCACCa                <  1:1193354/65‑1 (MQ=255)
               aaaGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGGAAGTGAACTTCATTCCTTGTCACCa                <  1:2453794/65‑1 (MQ=255)
               aaaGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGGAAGTGAACTTCATTCCTTGTCACCa                <  1:1167992/65‑1 (MQ=255)
               aaaGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGGAAGTGAACTTCATTCCTTGTCACCa                <  1:610967/65‑1 (MQ=255)
               aaaGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGGAAGTGAACTTCATTCCTTGTCACCa                <  1:64766/65‑1 (MQ=255)
               aaaGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGGAAGTGAACTTCATTCCTTGTCACCa                <  1:694943/65‑1 (MQ=255)
               aaaGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGGAAGTGAACTTCATTCCTTGTCACCa                <  1:1088498/65‑1 (MQ=255)
               aaaGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGGAAGTGAACTTCATTCCTTGTCACCa                <  1:75023/65‑1 (MQ=255)
               aaaGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGGAAGTGAACTTCATTCCTTGTCACCa                <  1:780690/65‑1 (MQ=255)
               aaaGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGGAAGTGAACTTCATTCCTTGTCACCa                <  1:1056974/65‑1 (MQ=255)
               aaaGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGGAAGTGAACTTCATTCCTTGTCACCa                <  1:818759/65‑1 (MQ=255)
               aaaGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGGAAGTGAACTTCATTCCTTGTCACCa                <  1:831823/65‑1 (MQ=255)
               aaaGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGGAAGTGAACTTCATTCCTTGTCACCa                <  1:848504/65‑1 (MQ=255)
               aaaGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGGAAGTGAACTTCATTCCTTGTCACCa                <  1:1002436/65‑1 (MQ=255)
               aaaGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGGAAGTGAACTTCATTCCTTGTCACCa                <  1:1596482/65‑1 (MQ=255)
               aaaGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGGAAGTGAACTTCATTCCTTGTCACCa                <  1:196184/65‑1 (MQ=255)
               aaaGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGGAAGTGAACTTCATTCCTTGTCACCa                <  1:1942071/65‑1 (MQ=255)
               aaaGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGGAAGTGAACTTCATTCCTTGTCACCa                <  1:1391640/65‑1 (MQ=255)
               aaaGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGGAAGTGAACTTCATTCCTTGTCACCa                <  1:1873087/65‑1 (MQ=255)
               aaaGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGGAAGTGAACTTCATTCCTTGTCACCa                <  1:1782798/65‑1 (MQ=255)
               aaaGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGGAAGTGAACTTCATTCCTTGTCACCa                <  1:2034034/65‑1 (MQ=255)
               aaaGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGGAAGTGAACTTCATTCCTTGTCACCa                <  1:2046244/65‑1 (MQ=255)
               aaaGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGGAAGTGAACTTCATTCCTTGTCACCa                <  1:2058853/65‑1 (MQ=255)
               aaaGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGGAAGTGAACTTCATTCCTTGTCACCa                <  1:1476784/65‑1 (MQ=255)
               aaaGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGGAAGTGAACTTCATTCCTTGTCACCa                <  1:1002277/65‑1 (MQ=255)
               aaaGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGGAAGTGAACTTCATTCCTTGTCACCa                <  1:2191593/65‑1 (MQ=255)
               aaaGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGGAAGTGAACTTCATTCCTTGTCACCa                <  1:1283890/65‑1 (MQ=255)
               aaaGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGGAAGTGAACTTCATTCCTTGTCACCa                <  1:1701322/65‑1 (MQ=255)
               aaaGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGGAAGTGAACTTCATTCCTTGTCACCa                <  1:2342430/65‑1 (MQ=255)
               aaaGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGGAAGTGAACTCCATTCCTTGTCACCa                <  1:1131455/65‑1 (MQ=255)
               aaaGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGGAAGTCAACTTCATTCCTTGTCACCa                <  1:609427/65‑1 (MQ=255)
                aaGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGGAAGTGAACTTCATTCCTTGTCACCa                <  1:196471/64‑1 (MQ=255)
                aaGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGGAAGTGAACTTCATTCCTTGTCACCa                <  1:520617/64‑1 (MQ=255)
                          gcAGGCGCTGGCAATACTGGAGCAGGGGGAAGTGAACTTCATTCCTTGTCACCATGTGAATGCCg     <  1:149470/65‑1 (MQ=255)
                          gcAGGCGCTGGCAATACTGGAGCAGGGGGAAGTGAACTTCATTCCTTGTCACCATGTGAATGCCg     <  1:827557/65‑1 (MQ=255)
                          gcAGGCGCTGGCAATACTGGAGCAGGGGGAAGTGAACTTCATTCCTTGTCACCATGTGAATGCCg     <  1:1712240/65‑1 (MQ=255)
                          gcAGGCGCTGGCAATACTGGAGCAGGGGGAAGTGAACTTCATTCCTTGTCACCATGTGAATGCCg     <  1:1696272/65‑1 (MQ=255)
                          gcAGGCGCTGGCAATACTGGAGCAGGGGGAAGTGAACTTCATTCCTTGTCACCATGTGAATGCCg     <  1:2391889/65‑1 (MQ=255)
                          gcAGGCGCTGGCAATACTGGAGCAGGGGGAAGTGAACTTCATTCCTTGTCACCATGTGAATGCCg     <  1:1091113/65‑1 (MQ=255)
                          gcAGGCGCTGGCAATACTGGAGCAGGGGGAAGTGAACTTCATTCCTTGTCACCATGTGAATGCCg     <  1:1358558/65‑1 (MQ=255)
                          gcAGGCGCTGGCAATACTGGAGCAGGGGGAAGTGAACTTCATTCCTTGTCACCATGTGAATGCCg     <  1:1353123/65‑1 (MQ=255)
                          gcAGGCGCTGGCAATACTGGAGCAGGGGGAAGTGAACTTCATTCCTTGTCACCATGTGAATGCCg     <  1:2017209/65‑1 (MQ=255)
                          gcAGGCGCTGGCAATACTGGAGCAGGGGGAAGTGAACTTCATTCCTTGTCACCATGTGAATGCCg     <  1:371498/65‑1 (MQ=255)
                          gcAGGCGCTGGCAATACTGGAGCAGGGGGAAGTGAACTTCATTCCTTGTCACCATGTGAATGCCg     <  1:2123150/65‑1 (MQ=255)
                          gcAGGCGCTGGCAATACTGGAGCAGGGGGAAGTGAACTTCATTCCTTGTCACCATGTGAATGCCg     <  1:298847/65‑1 (MQ=255)
                          gcAGGCGCTGGCAATACTGGAGCAGGGGGAAGTGAACTTCATTCCTTGTCACCATGTGAATGCCg     <  1:27182/65‑1 (MQ=255)
                          gcAGGCGCTGGCAATACTGGAGCAGGGGGAAGTGAACTTCATTCCTTGTCACCATGTGAATGCCg     <  1:125762/65‑1 (MQ=255)
                          gcAGGCGCTGGCAATACTGGAGCAGGGGGAAGTGAACTTCATTCCTTGTCACCATGTGAATGCCg     <  1:1214732/65‑1 (MQ=255)
                          gcAGGCGCTGGCAATACTGGAGCAGGGGGAAGTGAACTTCATTCCTTGTCACCATGTGAATGCCg     <  1:2394716/65‑1 (MQ=255)
                          gcAGGCCCTGGCAATACTGGAGCAGGGGGAAGTGAACTTCATTCCTTGTCACCATGTGAATGCCg     <  1:444051/65‑1 (MQ=255)
                           cAGGCGCTGGCAATACTGGAGCAGGGGGAAGTGAACTTCATTCCTTGTCACCATGTGAATGCCg     <  1:470218/64‑1 (MQ=255)
                           cAGGCGCTGGCAATACTGGAGCAGGGGGAAGTGAACTTCATTCCTTGTCACCATGTGAATGCCg     <  1:2011463/64‑1 (MQ=255)
                              gcgcTGGCAATACTGGAGCAGGGGGAAGTGAACTTCATTCCTTGTCACCATGTGAATGCCGTCg  <  1:821436/64‑1 (MQ=255)
                                            ggAGCAGGGGGATGTGAACTTCATTCCTTGTCACCa                <  1:2231058/36‑1 (MQ=255)
                                                  |                                           
TTCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGAAGTGAACTTCATTCCTTGTCACCATGTGAATGCCGTCG  >  W3110S.gb/547782‑547874

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: