Predicted mutation | ||||||
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evidence | seq id | position | mutation | annotation | gene | description |
RA | W3110S.gb | 2,595,278 | +A | coding (116/864 nt) | ypfJ ← | conserved hypothetical protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | W3110S.gb | 2,595,274 | 1 | . | A | 94.1% | 47.2 / ‑2.5 | 17 | coding (120/864 nt) | ypfJ | conserved hypothetical protein |
Reads supporting (aligned to +/- strand): ref base . (0/1); new base A (16/0); total (16/1) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 5.88e-02 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.71e-01 |
CGGTTAAATCAACACCATAGTAGCCTGCAACCAGCACGACTATCAGT‑AAAATCAGCCCGCCTTTACCGCTTGGCAGGCGAAAACCGGGACCGCC > W3110S.gb/2595228‑2595321 | cGGTTAAATCAACACCATAGTAGCCTGCAACCAGCACGACTATCAGTAAAAATCAGccc > 1:1114947/1‑59 (MQ=255) cGGTTAAATCAACACCATAGTAGCCTGCAACCAGCACGACTATCAGTAAAAATCAGCCCGCCttt > 1:895028/1‑65 (MQ=255) cGGTTAAATCAACACCATAGTAGCCTGCAACCAGCACGACTATCAGTAAAAATCAGCCCGCCttt > 1:1007317/1‑65 (MQ=255) cGGTTAAATCAACACCATAGTAGCCTGCAACCAGCACGACTATCAGTAAAAATCAGCCCGCCttt > 1:867034/1‑65 (MQ=255) cGGTTAAATCAACACCATAGTAGCCTGCAACCAGCACGACTATCAGTAAAAATCAGCCCGCCttt > 1:860295/1‑65 (MQ=255) cGGTTAAATCAACACCATAGTAGCCTGCAACCAGCACGACTATCAGTAAAAATCAGCCCGCCttt > 1:781749/1‑65 (MQ=255) cGGTTAAATCAACACCATAGTAGCCTGCAACCAGCACGACTATCAGTAAAAATCAGCCCGCCttt > 1:333474/1‑65 (MQ=255) cGGTTAAATCAACACCATAGTAGCCTGCAACCAGCACGACTATCAGTAAAAATCAGCCCGCCttt > 1:321082/1‑65 (MQ=255) cGGTTAAATCAACACCATAGTAGCCTGCAACCAGCACGACTATCAGTAAAAATCAGCCCGCCttt > 1:2399041/1‑65 (MQ=255) cGGTTAAATCAACACCATAGTAGCCTGCAACCAGCACGACTATCAGTAAAAATCAGCCCGCCttt > 1:228804/1‑65 (MQ=255) cGGTTAAATCAACACCATAGTAGCCTGCAACCAGCACGACTATCAGTAAAAATCAGCCCGCCttt > 1:2246707/1‑65 (MQ=255) cGGTTAAATCAACACCATAGTAGCCTGCAACCAGCACGACTATCAGTAAAAATCAGCCCGCCttt > 1:2242412/1‑65 (MQ=255) cGGTTAAATCAACACCATAGTAGCCTGCAACCAGCACGACTATCAGTAAAAATCAGCCCGCCttt > 1:2239363/1‑65 (MQ=255) cGGTTAAATCAACACCATAGTAGCCTGCAACCAGCACGACTATCAGTAAAAATCAGCCCGCCttt > 1:1945997/1‑65 (MQ=255) cGGTTAAATCAACACCATAGTAGCCTGCAACCAGCACGACTATCAGTAAAAATCAGCCCGCCttt > 1:1381343/1‑65 (MQ=255) cGGTTAAATCAACACCATAGTAGCCTGCAACCAGCACGACTATCAGTAAAAATCAGCCCGCCttt > 1:1126187/1‑65 (MQ=255) aGCACGACTATCAGT‑AAAATCAGCCCGCCTTTACCGCTTGGCAGGCGAAAACCGGGACCGcc < 1:1847732/62‑1 (MQ=255) | CGGTTAAATCAACACCATAGTAGCCTGCAACCAGCACGACTATCAGT‑AAAATCAGCCCGCCTTTACCGCTTGGCAGGCGAAAACCGGGACCGCC > W3110S.gb/2595228‑2595321 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |