Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	3039559	3039564	6	35 [0]	[0] 10	ygfY	conserved hypothetical protein

TGTCTGGATGAGTCGGACCATCATTTCCAGTTCTGCATCGGCCGGTTTACCGTGATTCATCAGCCA  >  W3110S.gb/3039493‑3039558                                                                  | tgtCTGGATGAGTCGGACCATCATTTCC‑GTTCTGCATCGGCCGGTTTACCGTGATTCATCAGCCa  <  1:2029947/65‑1 (MQ=255)  gtCTGGATGAGTCGGACCATTATTTCCAGTTCTGCATCGGCCGGTTTACCGTGATTCATCAGCCa  <  1:441121/65‑1 (MQ=255)  gtCTGGATGAGTCGGACCATCATTTCCAGTTCTGCATCGGCCGGTTTACCGTGATTCATCAGCCa  <  1:425638/65‑1 (MQ=255)  gtCTGGATGAGTCGGACCATCATTTCCAGTTCTGCATCGGCCGGTTTACCGTGATTCATCAGCCa  <  1:2349759/65‑1 (MQ=255)  gtCTGGATGAGTCGGACCATCATTTCCAGTTCTGCATCGGCCGGTTTACCGTGATTCATCAGCCa  <  1:2370583/65‑1 (MQ=255)  gtCTGGATGAGTCGGACCATCATTTCCAGTTCTGCATCGGCCGGTTTACCGTGATTCATCAGCCa  <  1:2406352/65‑1 (MQ=255)  gtCTGGATGAGTCGGACCATCATTTCCAGTTCTGCATCGGCCGGTTTACCGTGATTCATCAGCCa  <  1:2473650/65‑1 (MQ=255)  gtCTGGATGAGTCGGACCATCATTTCCAGTTCTGCATCGGCCGGTTTACCGTGATTCATCAGCCa  <  1:2502351/65‑1 (MQ=255)  gtCTGGATGAGTCGGACCATCATTTCCAGTTCTGCATCGGCCGGTTTACCGTGATTCATCAGCCa  <  1:392121/65‑1 (MQ=255)  gtCTGGATGAGTCGGACCATCATTTCCAGTTCTGCATCGGCCGGTTTACCGTGATTCATCAGCCa  <  1:423809/65‑1 (MQ=255)  gtCTGGATGAGTCGGACCATCATTTCCAGTTCTGCATCGGCCGGTTTACCGTGATTCATCAGCCa  <  1:1146519/65‑1 (MQ=255)  gtCTGGATGAGTCGGACCATCATTTCCAGTTCTGCATCGGCCGGTTTACCGTGATTCATCAGCCa  <  1:484768/65‑1 (MQ=255)  gtCTGGATGAGTCGGACCATCATTTCCAGTTCTGCATCGGCCGGTTTACCGTGATTCATCAGCCa  <  1:633430/65‑1 (MQ=255)  gtCTGGATGAGTCGGACCATCATTTCCAGTTCTGCATCGGCCGGTTTACCGTGATTCATCAGCCa  <  1:735213/65‑1 (MQ=255)  gtCTGGATGAGTCGGACCATCATTTCCAGTTCTGCATCGGCCGGTTTACCGTGATTCATCAGCCa  <  1:792424/65‑1 (MQ=255)  gtCTGGATGAGTCGGACCATCATTTCCAGTTCTGCATCGGCCGGTTTACCGTGATTCATCAGCCa  <  1:898192/65‑1 (MQ=255)  gtCTGGATGAGTCGGACCATCATTTCCAGTTCTGCATCGGCCGGTTTACCGTGATTCATCAGCCa  <  1:960557/65‑1 (MQ=255)  gtCTGGATGAGTCGGACCATCATTTCCAGTTCTGCATCGGCCGGTTTACCGTGATTCATCAGCCa  <  1:1493228/65‑1 (MQ=255)  gtCTGGATGAGTCGGACCATCATTTCCAGTTCTGCATCGGCCGGTTTACCGTGATTCATCAGCCa  <  1:1006176/65‑1 (MQ=255)  gtCTGGATGAGTCGGACCATCATTTCCAGTTCTGCATCGGCCGGTTTACCGTGATTCATCAGCCa  <  1:1179132/65‑1 (MQ=255)  gtCTGGATGAGTCGGACCATCATTTCCAGTTCTGCATCGGCCGGTTTACCGTGATTCATCAGCCa  <  1:1336891/65‑1 (MQ=255)  gtCTGGATGAGTCGGACCATCATTTCCAGTTCTGCATCGGCCGGTTTACCGTGATTCATCAGCCa  <  1:1452366/65‑1 (MQ=255)  gtCTGGATGAGTCGGACCATCATTTCCAGTTCTGCATCGGCCGGTTTACCGTGATTCATCAGCCa  <  1:1471465/65‑1 (MQ=255)  gtCTGGATGAGTCGGACCATCATTTCCAGTTCTGCATCGGCCGGTTTACCGTGATTCATCAGCCa  <  1:1579431/65‑1 (MQ=255)  gtCTGGATGAGTCGGACCATCATTTCCAGTTCTGCATCGGCCGGTTTACCGTGATTCATCAGCCa  <  1:1690646/65‑1 (MQ=255)  gtCTGGATGAGTCGGACCATCATTTCCAGTTCTGCATCGGCCGGTTTACCGTGATTCATCAGCCa  <  1:170918/65‑1 (MQ=255)  gtCTGGATGAGTCGGACCATCATTTCCAGTTCTGCATCGGCCGGTTTACCGTGATTCATCAGCCa  <  1:1833806/65‑1 (MQ=255)  gtCTGGATGAGTCGGACCATCATTTCCAGTTCTGCATCGGCCGGTTTACCGTGATTCATCAGCCa  <  1:1971958/65‑1 (MQ=255)  gtCTGGATGAGTCGGACCATCATTTCCAGTTCTGCATCGGCCGGTTTACCGTGATTCATCAGCCa  <  1:1972833/65‑1 (MQ=255)  gtCTGGATGAGTCGGACCATCATTTCCAGTTCTGCATCGGCCGGTTTACCGTGATTCATCAGCCa  <  1:2082178/65‑1 (MQ=255)  gtCTGGATGAGTCGGACCATCATATCCAGTTCTGCATCGGCCGGTTTACCGTGATTCATCAGCCa  <  1:2232204/65‑1 (MQ=255)  ggcTGGATGAGTCGGACCATCATTTCCAGTTCTGCATCGGCCGGTTTACCGTGATTCATCAGCCa  <  1:884207/63‑1 (MQ=255)   tCTGGATGAGTCGGACCATCATTTCCAGTTCTGCATCGGCCGGTTTACCGTGATTCATCAGCCa  <  1:1862533/64‑1 (MQ=255)         tGAGTCGGACCATCATTTCCAGTTCTGCATCGGCCGGTTTACCGTGATTCATCATCCa  <  1:1311242/58‑1 (MQ=255)                 aCCATCATTTCCAGTTCTGCATCGGACGGTTTACCGTGATTCATCAGCCa  <  1:955786/50‑1 (MQ=255)                                                                  | TGTCTGGATGAGTCGGACCATCATTTCCAGTTCTGCATCGGCCGGTTTACCGTGATTCATCAGCCA  >  W3110S.gb/3039493‑3039558

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑