Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	3158115	3158131	17	32 [0]	[0] 6	ygiQ	conserved hypothetical protein

ACAGCGCCAGATTCACCATATCTTCATCACGCGTACCGGGGTGCGCGGAGATGAAATAGGGGATC  >  W3110S.gb/3158050‑3158114                                                                 | acaGCGCCAGATTCACCATATCTTCATCACGCGTACCGGGGTGCGCGGAGATGAAATAGGGGATc  <  1:2313477/65‑1 (MQ=255) acaGCGCCAGATTCACCATATCTTCATCACGCGTACCGGGGTGCGCGGAGATGAAATAGGGGATc  <  1:972604/65‑1 (MQ=255) acaGCGCCAGATTCACCATATCTTCATCACGCGTACCGGGGTGCGCGGAGATGAAATAGGGGATc  <  1:965879/65‑1 (MQ=255) acaGCGCCAGATTCACCATATCTTCATCACGCGTACCGGGGTGCGCGGAGATGAAATAGGGGATc  <  1:845710/65‑1 (MQ=255) acaGCGCCAGATTCACCATATCTTCATCACGCGTACCGGGGTGCGCGGAGATGAAATAGGGGATc  <  1:833678/65‑1 (MQ=255) acaGCGCCAGATTCACCATATCTTCATCACGCGTACCGGGGTGCGCGGAGATGAAATAGGGGATc  <  1:783198/65‑1 (MQ=255) acaGCGCCAGATTCACCATATCTTCATCACGCGTACCGGGGTGCGCGGAGATGAAATAGGGGATc  <  1:730782/65‑1 (MQ=255) acaGCGCCAGATTCACCATATCTTCATCACGCGTACCGGGGTGCGCGGAGATGAAATAGGGGATc  <  1:600686/65‑1 (MQ=255) acaGCGCCAGATTCACCATATCTTCATCACGCGTACCGGGGTGCGCGGAGATGAAATAGGGGATc  <  1:467908/65‑1 (MQ=255) acaGCGCCAGATTCACCATATCTTCATCACGCGTACCGGGGTGCGCGGAGATGAAATAGGGGATc  <  1:382502/65‑1 (MQ=255) acaGCGCCAGATTCACCATATCTTCATCACGCGTACCGGGGTGCGCGGAGATGAAATAGGGGATc  <  1:314207/65‑1 (MQ=255) acaGCGCCAGATTCACCATATCTTCATCACGCGTACCGGGGTGCGCGGAGATGAAATAGGGGATc  <  1:2493466/65‑1 (MQ=255) acaGCGCCAGATTCACCATATCTTCATCACGCGTACCGGGGTGCGCGGAGATGAAATAGGGGATc  <  1:1026387/65‑1 (MQ=255) acaGCGCCAGATTCACCATATCTTCATCACGCGTACCGGGGTGCGCGGAGATGAAATAGGGGATc  <  1:2270945/65‑1 (MQ=255) acaGCGCCAGATTCACCATATCTTCATCACGCGTACCGGGGTGCGCGGAGATGAAATAGGGGATc  <  1:2027628/65‑1 (MQ=255) acaGCGCCAGATTCACCATATCTTCATCACGCGTACCGGGGTGCGCGGAGATGAAATAGGGGATc  <  1:1986572/65‑1 (MQ=255) acaGCGCCAGATTCACCATATCTTCATCACGCGTACCGGGGTGCGCGGAGATGAAATAGGGGATc  <  1:1938810/65‑1 (MQ=255) acaGCGCCAGATTCACCATATCTTCATCACGCGTACCGGGGTGCGCGGAGATGAAATAGGGGATc  <  1:2132148/65‑1 (MQ=255) acaGCGCCAGATTCACCATATCTTCATCACGCGTACCGGGGTGCGCGGAGATGAAATAGGGGATc  <  1:1831677/65‑1 (MQ=255) acaGCGCCAGATTCACCATATCTTCATCACGCGTACCGGGGTGCGCGGAGATGAAATAGGGGATc  <  1:1821346/65‑1 (MQ=255) acaGCGCCAGATTCACCATATCTTCATCACGCGTACCGGGGTGCGCGGAGATGAAATAGGGGATc  <  1:170526/65‑1 (MQ=255) acaGCGCCAGATTCACCATATCTTCATCACGCGTACCGGGGTGCGCGGAGATGAAATAGGGGATc  <  1:1357356/65‑1 (MQ=255) acaGCGCCAGATTCACCATATCTTCATCACGCGTACCGGGGTGCGCGGAGATGAAATAGGGGATc  <  1:1586016/65‑1 (MQ=255)  caGCGCCAGATTCACCATATCTTCATCACGCGTACCGGGGTGCGCGGAGATGAAATAGGGGATc  <  1:1042889/64‑1 (MQ=255)  caGCGCCAGATTCACCATATCTTCATCACGCGTACCGGGGTGCGCGGAGATGAAATAGGGGATc  <  1:1052449/64‑1 (MQ=255)  caGCGCCAGATTCACCATATCTTCATCACGCGTACCGGGGTGCGCGGAGATGAAATAGGGGATc  <  1:1459514/64‑1 (MQ=255)  caGCGCCAGATTCACCATATCTTCATCACGCGTACCGGGGTGCGCGGAGATGAAATAGGGGATc  <  1:1501843/64‑1 (MQ=255)  caGCGCCAGATTCACCATATCTTCATCACGCGTACCGGGGTGCGCGGAGATGAAATAGGGGATc  <  1:1531391/64‑1 (MQ=255)  caGCGCCAGATTCACCATATCTTCATCACGCGTACCGGGGTGCGCGGAGATGAAATAGGGGATc  <  1:593955/64‑1 (MQ=255)  caGCGCCAGATTCACCATATCTTCATCACGCGTACCGGGGTGCGCGGAGATGAAATAGGGGATc  <  1:54329/64‑1 (MQ=255)                 cATATCTTCATCACGCGTACCGGGGTGCGCGGAGATGAAATAGGGGATc  <  1:298346/49‑1 (MQ=255)                               gcgTACCGGGGTGCGCGGAGATGAAATATGGGATc  <  1:951608/35‑1 (MQ=255)                                                                 | ACAGCGCCAGATTCACCATATCTTCATCACGCGTACCGGGGTGCGCGGAGATGAAATAGGGGATC  >  W3110S.gb/3158050‑3158114

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑