Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	3942541	3942545	5	31 [0]	[0] 29	bcsE	conserved hypothetical protein

ACCGGTTTAGAACTTTGCGTTAAAGGCAGCGGCATGCCCCATTGTTCTGGGGCAAGCAAGCGCAT  >  W3110S.gb/3942476‑3942540                                                                 | aCCGGTTTAGAACTTTGCGTTAATGGCAGCGGCATGCCCCATTGTTCTGGGGCAAGCAAGCGCAt  >  1:88280/1‑65 (MQ=255) aCCGGTTTAGAACTTTGCGTTAAAGGCAGCGGCATGCCCCATTGTTCTGGGGCAAGCAAGCGCAt  >  1:2058153/1‑65 (MQ=255) aCCGGTTTAGAACTTTGCGTTAAAGGCAGCGGCATGCCCCATTGTTCTGGGGCAAGCAAGCGCAt  >  1:904242/1‑65 (MQ=255) aCCGGTTTAGAACTTTGCGTTAAAGGCAGCGGCATGCCCCATTGTTCTGGGGCAAGCAAGCGCAt  >  1:823212/1‑65 (MQ=255) aCCGGTTTAGAACTTTGCGTTAAAGGCAGCGGCATGCCCCATTGTTCTGGGGCAAGCAAGCGCAt  >  1:502223/1‑65 (MQ=255) aCCGGTTTAGAACTTTGCGTTAAAGGCAGCGGCATGCCCCATTGTTCTGGGGCAAGCAAGCGCAt  >  1:471964/1‑65 (MQ=255) aCCGGTTTAGAACTTTGCGTTAAAGGCAGCGGCATGCCCCATTGTTCTGGGGCAAGCAAGCGCAt  >  1:398344/1‑65 (MQ=255) aCCGGTTTAGAACTTTGCGTTAAAGGCAGCGGCATGCCCCATTGTTCTGGGGCAAGCAAGCGCAt  >  1:397341/1‑65 (MQ=255) aCCGGTTTAGAACTTTGCGTTAAAGGCAGCGGCATGCCCCATTGTTCTGGGGCAAGCAAGCGCAt  >  1:363416/1‑65 (MQ=255) aCCGGTTTAGAACTTTGCGTTAAAGGCAGCGGCATGCCCCATTGTTCTGGGGCAAGCAAGCGCAt  >  1:24599/1‑65 (MQ=255) aCCGGTTTAGAACTTTGCGTTAAAGGCAGCGGCATGCCCCATTGTTCTGGGGCAAGCAAGCGCAt  >  1:2397337/1‑65 (MQ=255) aCCGGTTTAGAACTTTGCGTTAAAGGCAGCGGCATGCCCCATTGTTCTGGGGCAAGCAAGCGCAt  >  1:2342540/1‑65 (MQ=255) aCCGGTTTAGAACTTTGCGTTAAAGGCAGCGGCATGCCCCATTGTTCTGGGGCAAGCAAGCGCAt  >  1:2265078/1‑65 (MQ=255) aCCGGTTTAGAACTTTGCGTTAAAGGCAGCGGCATGCCCCATTGTTCTGGGGCAAGCAAGCGCAt  >  1:2205369/1‑65 (MQ=255) aCCGGTTTAGAACTTTGCGTTAAAGGCAGCGGCATGCCCCATTGTTCTGGGGCAAGCAAGCGCAt  >  1:2191471/1‑65 (MQ=255) aCCGGTTTAGAACTTTGCGTTAAAGGCAGCGGCATGCCCCATTGTTCTGGGGCAAGCAAGCGCAt  >  1:2119732/1‑65 (MQ=255) aCCGGTTTAGAACTTTGCGTTAAAGGCAGCGGCATGCCCCATTGTTCTGGGGCAAGCAAGCGCAt  >  1:1096417/1‑65 (MQ=255) aCCGGTTTAGAACTTTGCGTTAAAGGCAGCGGCATGCCCCATTGTTCTGGGGCAAGCAAGCGCAt  >  1:2051407/1‑65 (MQ=255) aCCGGTTTAGAACTTTGCGTTAAAGGCAGCGGCATGCCCCATTGTTCTGGGGCAAGCAAGCGCAt  >  1:2044210/1‑65 (MQ=255) aCCGGTTTAGAACTTTGCGTTAAAGGCAGCGGCATGCCCCATTGTTCTGGGGCAAGCAAGCGCAt  >  1:1959802/1‑65 (MQ=255) aCCGGTTTAGAACTTTGCGTTAAAGGCAGCGGCATGCCCCATTGTTCTGGGGCAAGCAAGCGCAt  >  1:185777/1‑65 (MQ=255) aCCGGTTTAGAACTTTGCGTTAAAGGCAGCGGCATGCCCCATTGTTCTGGGGCAAGCAAGCGCAt  >  1:1821169/1‑65 (MQ=255) aCCGGTTTAGAACTTTGCGTTAAAGGCAGCGGCATGCCCCATTGTTCTGGGGCAAGCAAGCGCAt  >  1:180778/1‑65 (MQ=255) aCCGGTTTAGAACTTTGCGTTAAAGGCAGCGGCATGCCCCATTGTTCTGGGGCAAGCAAGCGCAt  >  1:178789/1‑65 (MQ=255) aCCGGTTTAGAACTTTGCGTTAAAGGCAGCGGCATGCCCCATTGTTCTGGGGCAAGCAAGCGCAt  >  1:174341/1‑65 (MQ=255) aCCGGTTTAGAACTTTGCGTTAAAGGCAGCGGCATGCCCCATTGTTCTGGGGCAAGCAAGCGCAt  >  1:1742278/1‑65 (MQ=255) aCCGGTTTAGAACTTTGCGTTAAAGGCAGCGGCATGCCCCATTGTTCTGGGGCAAGCAAGCGCAt  >  1:1723153/1‑65 (MQ=255) aCCGGTTTAGAACTTTGCGTTAAAGGCAGCGGCATGCCCCATTGTTCTGGGGCAAGCAAGCGCAt  >  1:1667525/1‑65 (MQ=255) aCCGGTTTAGAACTTTGCGTTAAAGGCAGCGGCATGCCCCATTGTTCTGGGGCAAGCAAGCGCAt  >  1:1406244/1‑65 (MQ=255) aCCGGTTTAGAACTTTGCGTTAAAGGCAGCGGCATGCCCCATTGTTCTGGGGCAAGCAAGCGCAt  >  1:1226904/1‑65 (MQ=255) aCCGGTTTAGAACTTTGCGTTAAAGGCAGCGGCATGCCCCATTGTTCTGGGGCAAGCAAGCGCAt  >  1:1169054/1‑65 (MQ=255)                                                                 | ACCGGTTTAGAACTTTGCGTTAAAGGCAGCGGCATGCCCCATTGTTCTGGGGCAAGCAAGCGCAT  >  W3110S.gb/3942476‑3942540

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑