Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	4010427	4010491	65	43 [0]	[2] 13	yhiI	predicted HlyD family secretion protein

CGGCACGCACCAATATCATTCAGGCGCAAACCCGCGTCGAAGCGGCACAAGCCACTGAACGGCGC  >  W3110S.gb/4010362‑4010426                                                                 | cGGCCCGCACCAATATCATTCAGGCGCAAACCCGCGTCGAAGCGGCACAAGCCACTGAACGgcgc  >  1:840935/1‑65 (MQ=255) cGGCACGCACCAATATCATTCAGGCGCAACCCCGCGTCGAAGCGGCACAAGCCACTGAACGgcgc  >  1:596291/1‑65 (MQ=255) cGGCACGCACCAATATCATTCAGGCGCAAACCCGCGTCGAAGCGGCACAAGCCACTGAACGgcgc  >  1:395757/1‑65 (MQ=255) cGGCACGCACCAATATCATTCAGGCGCAAACCCGCGTCGAAGCGGCACAAGCCACTGAACGgcgc  >  1:2019280/1‑65 (MQ=255) cGGCACGCACCAATATCATTCAGGCGCAAACCCGCGTCGAAGCGGCACAAGCCACTGAACGgcgc  >  1:209771/1‑65 (MQ=255) cGGCACGCACCAATATCATTCAGGCGCAAACCCGCGTCGAAGCGGCACAAGCCACTGAACGgcgc  >  1:2108567/1‑65 (MQ=255) cGGCACGCACCAATATCATTCAGGCGCAAACCCGCGTCGAAGCGGCACAAGCCACTGAACGgcgc  >  1:2152823/1‑65 (MQ=255) cGGCACGCACCAATATCATTCAGGCGCAAACCCGCGTCGAAGCGGCACAAGCCACTGAACGgcgc  >  1:2175386/1‑65 (MQ=255) cGGCACGCACCAATATCATTCAGGCGCAAACCCGCGTCGAAGCGGCACAAGCCACTGAACGgcgc  >  1:2292177/1‑65 (MQ=255) cGGCACGCACCAATATCATTCAGGCGCAAACCCGCGTCGAAGCGGCACAAGCCACTGAACGgcgc  >  1:2315468/1‑65 (MQ=255) cGGCACGCACCAATATCATTCAGGCGCAAACCCGCGTCGAAGCGGCACAAGCCACTGAACGgcgc  >  1:2317953/1‑65 (MQ=255) cGGCACGCACCAATATCATTCAGGCGCAAACCCGCGTCGAAGCGGCACAAGCCACTGAACGgcgc  >  1:350999/1‑65 (MQ=255) cGGCACGCACCAATATCATTCAGGCGCAAACCCGCGTCGAAGCGGCACAAGCCACTGAACGgcgc  >  1:377793/1‑65 (MQ=255) cGGCACGCACCAATATCATTCAGGCGCAAACCCGCGTCGAAGCGGCACAAGCCACTGAACGgcgc  >  1:1968903/1‑65 (MQ=255) cGGCACGCACCAATATCATTCAGGCGCAAACCCGCGTCGAAGCGGCACAAGCCACTGAACGgcgc  >  1:399774/1‑65 (MQ=255) cGGCACGCACCAATATCATTCAGGCGCAAACCCGCGTCGAAGCGGCACAAGCCACTGAACGgcgc  >  1:406201/1‑65 (MQ=255) cGGCACGCACCAATATCATTCAGGCGCAAACCCGCGTCGAAGCGGCACAAGCCACTGAACGgcgc  >  1:444170/1‑65 (MQ=255) cGGCACGCACCAATATCATTCAGGCGCAAACCCGCGTCGAAGCGGCACAAGCCACTGAACGgcgc  >  1:815157/1‑65 (MQ=255) cGGCACGCACCAATATCATTCAGGCGCAAACCCGCGTCGAAGCGGCACAAGCCACTGAACGgcgc  >  1:846842/1‑65 (MQ=255) cGGCACGCACCAATATCATTCAGGCGCAAACCCGCGTCGAAGCGGCACAAGCCACTGAACGgcgc  >  1:960082/1‑65 (MQ=255) cGGCACGCACCAATATCATTCAGGCGCAAACCCGCGTCGAAGCGGCACAAGCCACTGAACGgcgc  >  1:970280/1‑65 (MQ=255) cGGCACGCACCAATATCATTCAGGCGCAAACCCGCGTCGAAGCGGCACAAGCCACTGAACGgcgc  >  1:154508/1‑65 (MQ=255) cGGCACGCACCAATATCATTCAGGCGCAAACCCGCGTCGAAGCGGCACAAGCCACTGAACGgcgc  >  1:1098103/1‑65 (MQ=255) cGGCACGCACCAATATCATTCAGGCGCAAACCCGCGTCGAAGCGGCACAAGCCACTGAACGgcgc  >  1:1104493/1‑65 (MQ=255) cGGCACGCACCAATATCATTCAGGCGCAAACCCGCGTCGAAGCGGCACAAGCCACTGAACGgcgc  >  1:1142771/1‑65 (MQ=255) cGGCACGCACCAATATCATTCAGGCGCAAACCCGCGTCGAAGCGGCACAAGCCACTGAACGgcgc  >  1:1249045/1‑65 (MQ=255) cGGCACGCACCAATATCATTCAGGCGCAAACCCGCGTCGAAGCGGCACAAGCCACTGAACGgcgc  >  1:1278659/1‑65 (MQ=255) cGGCACGCACCAATATCATTCAGGCGCAAACCCGCGTCGAAGCGGCACAAGCCACTGAACGgcgc  >  1:1355551/1‑65 (MQ=255) cGGCACGCACCAATATCATTCAGGCGCAAACCCGCGTCGAAGCGGCACAAGCCACTGAACGgcgc  >  1:1387990/1‑65 (MQ=255) cGGCACGCACCAATATCATTCAGGCGCAAACCCGCGTCGAAGCGGCACAAGCCACTGAACGgcgc  >  1:1418722/1‑65 (MQ=255) cGGCACGCACCAATATCATTCAGGCGCAAACCCGCGTCGAAGCGGCACAAGCCACTGAACGgcgc  >  1:1494954/1‑65 (MQ=255) cGGCACGCACCAATATCATTCAGGCGCAAACCCGCGTCGAAGCGGCACAAGCCACTGAACGgcgc  >  1:1073042/1‑65 (MQ=255) cGGCACGCACCAATATCATTCAGGCGCAAACCCGCGTCGAAGCGGCACAAGCCACTGAACGgcgc  >  1:1652981/1‑65 (MQ=255) cGGCACGCACCAATATCATTCAGGCGCAAACCCGCGTCGAAGCGGCACAAGCCACTGAACGgcgc  >  1:1735665/1‑65 (MQ=255) cGGCACGCACCAATATCATTCAGGCGCAAACCCGCGTCGAAGCGGCACAAGCCACTGAACGgcgc  >  1:1753056/1‑65 (MQ=255) cGGCACGCACCAATATCATTCAGGCGCAAACCCGCGTCGAAGCGGCACAAGCCACTGAACGgcgc  >  1:1802639/1‑65 (MQ=255) cGGCACGCACCAATATCATTCAGGCGCAAACCCGCGTCGAAGCGGCACAAGCCACTGAACGgcgc  >  1:1851657/1‑65 (MQ=255) cGGCACGCACCAATATCATTCAGGCGCAAACCCGCGTCGAAGCGGCACAAGCCACTGAACGgcgc  >  1:1853142/1‑65 (MQ=255) cGGCACGCACCAATATCATTCAGGCGCAAACCCGCGTCGAAGCGGCACAAGCCACTGAACGgcgc  >  1:1856884/1‑65 (MQ=255) cGGCACGCACCAATATCATTCAGGCGCAAACCCGCGTCGAAGCGGCACAAGCCACTGAACGgcgc  >  1:1903319/1‑65 (MQ=255) cGGCACGCACCAATATCATTCAGGCGCAAACCCGCGTCGAAGCGGCACAAGCCACTGAACGgcgc  >  1:1914999/1‑65 (MQ=255) cGGCACGCACCAATATCATTCAGGCGCAAACCCGCGTCGAAGCGGCACAAGCCACTGAACGgcgc  >  1:1937512/1‑65 (MQ=255) cGGCACACACCAATATCATTCAGGCGCAAACCCGCGTCGAAGCGGCACAAGCCACTGAACGgcgc  >  1:686059/1‑65 (MQ=255)                                                                 | CGGCACGCACCAATATCATTCAGGCGCAAACCCGCGTCGAAGCGGCACAAGCCACTGAACGGCGC  >  W3110S.gb/4010362‑4010426

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑