Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	4104558	4104624	67	30 [2]	[0] 28	envZ	sensory histidine kinase in two‑component regulatory system with OmpR

TTACATTCAGACCGTCTGGGGTCTGGGCTACGTCTTTGTACCGGACGGCTCTAAAGCATGAGGCGATTGCG  >  W3110S.gb/4104493‑4104563                                                                 |       ttACATTCAGACCGTCTGGGGTCTGGGCTACGTCTTTGTACCGGACGGCTCTAAAGCATGAGGCg        >  1:2318559/1‑65 (MQ=255) ttACATTCAGACCGTCTGGGGTCTGGGCTACGTCTTTGTACCGGACGGCTCTAAAGCATGAGGCg        >  1:896913/1‑65 (MQ=255) ttACATTCAGACCGTCTGGGGTCTGGGCTACGTCTTTGTACCGGACGGCTCTAAAGCATGAGGCg        >  1:80003/1‑65 (MQ=255) ttACATTCAGACCGTCTGGGGTCTGGGCTACGTCTTTGTACCGGACGGCTCTAAAGCATGAGGCg        >  1:787047/1‑65 (MQ=255) ttACATTCAGACCGTCTGGGGTCTGGGCTACGTCTTTGTACCGGACGGCTCTAAAGCATGAGGCg        >  1:751877/1‑65 (MQ=255) ttACATTCAGACCGTCTGGGGTCTGGGCTACGTCTTTGTACCGGACGGCTCTAAAGCATGAGGCg        >  1:659089/1‑65 (MQ=255) ttACATTCAGACCGTCTGGGGTCTGGGCTACGTCTTTGTACCGGACGGCTCTAAAGCATGAGGCg        >  1:476400/1‑65 (MQ=255) ttACATTCAGACCGTCTGGGGTCTGGGCTACGTCTTTGTACCGGACGGCTCTAAAGCATGAGGCg        >  1:41199/1‑65 (MQ=255) ttACATTCAGACCGTCTGGGGTCTGGGCTACGTCTTTGTACCGGACGGCTCTAAAGCATGAGGCg        >  1:408067/1‑65 (MQ=255) ttACATTCAGACCGTCTGGGGTCTGGGCTACGTCTTTGTACCGGACGGCTCTAAAGCATGAGGCg        >  1:359748/1‑65 (MQ=255) ttACATTCAGACCGTCTGGGGTCTGGGCTACGTCTTTGTACCGGACGGCTCTAAAGCATGAGGCg        >  1:318029/1‑65 (MQ=255) ttACATTCAGACCGTCTGGGGTCTGGGCTACGTCTTTGTACCGGACGGCTCTAAAGCATGAGGCg        >  1:2426932/1‑65 (MQ=255) ttACATTCAGACCGTCTGGGGTCTGGGCTACGTCTTTGTACCGGACGGCTCTAAAGCATGAGGCg        >  1:234916/1‑65 (MQ=255) ttACATTCAGACCGTCTGGGGTCTGGGCTACGTCTTTGTACCGGACGGCTCTAAAGCATGAGGCg        >  1:2319139/1‑65 (MQ=255) ttACATTCAGACCGTCTGGGGTCTGGGCTACGTCTTTGTACCGGACGGCTCTAAAGCATGAGGCg        >  1:2184107/1‑65 (MQ=255) ttACATTCAGACCGTCTGGGGTCTGGGCTACGTCTTTGTACCGGACGGCTCTAAAGCATGAGGCg        >  1:2122992/1‑65 (MQ=255) ttACATTCAGACCGTCTGGGGTCTGGGCTACGTCTTTGTACCGGACGGCTCTAAAGCATGAGGCg        >  1:2023640/1‑65 (MQ=255) ttACATTCAGACCGTCTGGGGTCTGGGCTACGTCTTTGTACCGGACGGCTCTAAAGCATGAGGCg        >  1:1825058/1‑65 (MQ=255) ttACATTCAGACCGTCTGGGGTCTGGGCTACGTCTTTGTACCGGACGGCTCTAAAGCATGAGGCg        >  1:1810884/1‑65 (MQ=255) ttACATTCAGACCGTCTGGGGTCTGGGCTACGTCTTTGTACCGGACGGCTCTAAAGCATGAGGCg        >  1:178934/1‑65 (MQ=255) ttACATTCAGACCGTCTGGGGTCTGGGCTACGTCTTTGTACCGGACGGCTCTAAAGCATGAGGCg        >  1:1715066/1‑65 (MQ=255) ttACATTCAGACCGTCTGGGGTCTGGGCTACGTCTTTGTACCGGACGGCTCTAAAGCATGAGGCg        >  1:170502/1‑65 (MQ=255) ttACATTCAGACCGTCTGGGGTCTGGGCTACGTCTTTGTACCGGACGGCTCTAAAGCATGAGGCg        >  1:1660415/1‑65 (MQ=255) ttACATTCAGACCGTCTGGGGTCTGGGCTACGTCTTTGTACCGGACGGCTCTAAAGCATGAGGCg        >  1:1581156/1‑65 (MQ=255) ttACATTCAGACCGTCTGGGGTCTGGGCTACGTCTTTGTACCGGACGGCTCTAAAGCATGAGGCg        >  1:143537/1‑65 (MQ=255) ttACATTCAGACCGTCTGGGGTCTGGGCTACGTCTTTGTACCGGACGGCTCTAAAGCATGAGGCg        >  1:1395928/1‑65 (MQ=255) ttACATTCAGACCGTCTGGGGTCTGGGCTACGTCTTTGTACCGGACGGCTCTAAAGCATGAGGCg        >  1:1387622/1‑65 (MQ=255) ttACATTCAGACCGTCTGGGGTCTGGGCTACGTCTTTGTACCGGACGGCTCTAAAGCATGAGGCg        >  1:1293003/1‑65 (MQ=255)       tCAGACCGTCTGGGGTCTGGGCTACGTCTTTGTACCGGACGGCTCTAAAGCATGAGGCGATTgcg  >  1:1019203/1‑65 (MQ=255)       tCAGACCGTCTGGGGTCTGGGCTACGTCTTTGTACCGGACGGCTCTAAAGCATGAGGCGATTgcg  >  1:634045/1‑65 (MQ=255)                                                                 |       TTACATTCAGACCGTCTGGGGTCTGGGCTACGTCTTTGTACCGGACGGCTCTAAAGCATGAGGCGATTGCG  >  W3110S.gb/4104493‑4104563

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑