Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	4408859	4408887	29	15 [0]	[0] 27	hflC	modulator for HflB protease specific for phage lambda cII repressor

GCGTGGTGAAGGCGATGCCGAAGCAGCCAAACTGTTTGCTGATGCATTCAGTAAAGATCCGGACT  >  W3110S.gb/4408794‑4408858                                                                 | gCGTGGTGAAGGCGATGCCGAAGCAGCCAAACTGTTTGCTGATGCATTCAGTAAAGATCCGGACt  <  1:1213729/65‑1 (MQ=255) gCGTGGTGAAGGCGATGCCGAAGCAGCCAAACTGTTTGCTGATGCATTCAGTAAAGATCCGGACt  <  1:1271863/65‑1 (MQ=255) gCGTGGTGAAGGCGATGCCGAAGCAGCCAAACTGTTTGCTGATGCATTCAGTAAAGATCCGGACt  <  1:1547903/65‑1 (MQ=255) gCGTGGTGAAGGCGATGCCGAAGCAGCCAAACTGTTTGCTGATGCATTCAGTAAAGATCCGGACt  <  1:1664581/65‑1 (MQ=255) gCGTGGTGAAGGCGATGCCGAAGCAGCCAAACTGTTTGCTGATGCATTCAGTAAAGATCCGGACt  <  1:1961345/65‑1 (MQ=255) gCGTGGTGAAGGCGATGCCGAAGCAGCCAAACTGTTTGCTGATGCATTCAGTAAAGATCCGGACt  <  1:213221/65‑1 (MQ=255) gCGTGGTGAAGGCGATGCCGAAGCAGCCAAACTGTTTGCTGATGCATTCAGTAAAGATCCGGACt  <  1:2386374/65‑1 (MQ=255) gCGTGGTGAAGGCGATGCCGAAGCAGCCAAACTGTTTGCTGATGCATTCAGTAAAGATCCGGACt  <  1:2426569/65‑1 (MQ=255) gCGTGGTGAAGGCGATGCCGAAGCAGCCAAACTGTTTGCTGATGCATTCAGTAAAGATCCGGACt  <  1:281687/65‑1 (MQ=255) gCGTGGTGAAGGCGATGCCGAAGCAGCCAAACTGTTTGCTGATGCATTCAGTAAAGATCCGGACt  <  1:411599/65‑1 (MQ=255) gCGTGGTGAAGGCGATGCCGAAGCAGCCAAACTGTTTGCTGATGCATTCAGTAAAGATCCGGACt  <  1:603138/65‑1 (MQ=255) gCGTGGTGAAGGCGATGCCGAAGCAGCCAAACTGTTTGCTGATGCATTCAGTAAAGATCCGGACt  <  1:705178/65‑1 (MQ=255)  cGTGGTGAAGGCGATGCCGAAGCAGCCAAACTGTTTGCTGATGCATTCAGTAAAGATCCGGACt  <  1:1044480/64‑1 (MQ=255)  cGTGGTGAAGGCGATGCCGAAGCAGCCAAACTGTTTGCTGATGCATTCAGTAAAGATCCGGACt  <  1:184441/64‑1 (MQ=255)                       gcagcCAAACTGTTTGCTGATGCATTCAGTAAAGATCCGGACt  <  1:1512603/43‑1 (MQ=255)                                                                 | GCGTGGTGAAGGCGATGCCGAAGCAGCCAAACTGTTTGCTGATGCATTCAGTAAAGATCCGGACT  >  W3110S.gb/4408794‑4408858

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑