Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	4504614	4504619	6	45 [0]	[0] 27	yjgX	ECK4266:JW5764+JW4234+JW5763:b4575; KpLE2 phage‑like element; hypothetical protein

CAGGATTGGCACTGTCGCTGACCGACAGCCCAAGGCCAGAAAAGTAAAGCATGGCGAAATGACG  >  W3110S.gb/4504550‑4504613                                                                | cAGGATTGGCACTGTCGCTGACCGACAGCCCAAGGCCAGAAAAGTAAAGCATGGCGAAATGACg  <  1:435069/64‑1 (MQ=255) cAGGATTGGCACTGTCGCTGACCGACAGCCCAAGGCCAGAAAAGTAAAGCATGGCGAAATGACg  <  1:2455859/64‑1 (MQ=255) cAGGATTGGCACTGTCGCTGACCGACAGCCCAAGGCCAGAAAAGTAAAGCATGGCGAAATGACg  <  1:2488897/64‑1 (MQ=255) cAGGATTGGCACTGTCGCTGACCGACAGCCCAAGGCCAGAAAAGTAAAGCATGGCGAAATGACg  <  1:2489116/64‑1 (MQ=255) cAGGATTGGCACTGTCGCTGACCGACAGCCCAAGGCCAGAAAAGTAAAGCATGGCGAAATGACg  <  1:249933/64‑1 (MQ=255) cAGGATTGGCACTGTCGCTGACCGACAGCCCAAGGCCAGAAAAGTAAAGCATGGCGAAATGACg  <  1:2533542/64‑1 (MQ=255) cAGGATTGGCACTGTCGCTGACCGACAGCCCAAGGCCAGAAAAGTAAAGCATGGCGAAATGACg  <  1:369906/64‑1 (MQ=255) cAGGATTGGCACTGTCGCTGACCGACAGCCCAAGGCCAGAAAAGTAAAGCATGGCGAAATGACg  <  1:373846/64‑1 (MQ=255) cAGGATTGGCACTGTCGCTGACCGACAGCCCAAGGCCAGAAAAGTAAAGCATGGCGAAATGACg  <  1:378971/64‑1 (MQ=255) cAGGATTGGCACTGTCGCTGACCGACAGCCCAAGGCCAGAAAAGTAAAGCATGGCGAAATGACg  <  1:410707/64‑1 (MQ=255) cAGGATTGGCACTGTCGCTGACCGACAGCCCAAGGCCAGAAAAGTAAAGCATGGCGAAATGACg  <  1:433300/64‑1 (MQ=255) cAGGATTGGCACTGTCGCTGACCGACAGCCCAAGGCCAGAAAAGTAAAGCATGGCGAAATGACg  <  1:2404576/64‑1 (MQ=255) cAGGATTGGCACTGTCGCTGACCGACAGCCCAAGGCCAGAAAAGTAAAGCATGGCGAAATGACg  <  1:452968/64‑1 (MQ=255) cAGGATTGGCACTGTCGCTGACCGACAGCCCAAGGCCAGAAAAGTAAAGCATGGCGAAATGACg  <  1:589429/64‑1 (MQ=255) cAGGATTGGCACTGTCGCTGACCGACAGCCCAAGGCCAGAAAAGTAAAGCATGGCGAAATGACg  <  1:621698/64‑1 (MQ=255) cAGGATTGGCACTGTCGCTGACCGACAGCCCAAGGCCAGAAAAGTAAAGCATGGCGAAATGACg  <  1:629969/64‑1 (MQ=255) cAGGATTGGCACTGTCGCTGACCGACAGCCCAAGGCCAGAAAAGTAAAGCATGGCGAAATGACg  <  1:665029/64‑1 (MQ=255) cAGGATTGGCACTGTCGCTGACCGACAGCCCAAGGCCAGAAAAGTAAAGCATGGCGAAATGACg  <  1:749293/64‑1 (MQ=255) cAGGATTGGCACTGTCGCTGACCGACAGCCCAAGGCCAGAAAAGTAAAGCATGGCGAAATGACg  <  1:785991/64‑1 (MQ=255) cAGGATTGGCACTGTCGCTGACCGACAGCCCAAGGCCAGAAAAGTAAAGCATGGCGAAATGACg  <  1:850772/64‑1 (MQ=255) cAGGATTGGCACTGTCGCTGACCGACAGCCCAAGGCCAGAAAAGTAAAGCATGGCGAAATGACg  <  1:890615/64‑1 (MQ=255) cAGGATTGGCACTGTCGCTGACCGACAGCCCAAGGCCAGAAAAGTAAAGCATGGCGAAATGACg  <  1:955402/64‑1 (MQ=255) cAGGATTGGCACTGTCGCTGACCGACAGCCCAAGGCCAGAAAAGTAAAGCATGGCGAAATGACg  <  1:1976418/64‑1 (MQ=255) cAGGATTGGCACTGTCGCTGACCGACAGCCCAAGGCCAGAAAAGTAAAGCATGGCGAAATGACg  <  1:1248309/64‑1 (MQ=255) cAGGATTGGCACTGTCGCTGACCGACAGCCCAAGGCCAGAAAAGTAAAGCATGGCGAAATGACg  <  1:1421002/64‑1 (MQ=255) cAGGATTGGCACTGTCGCTGACCGACAGCCCAAGGCCAGAAAAGTAAAGCATGGCGAAATGACg  <  1:1424494/64‑1 (MQ=255) cAGGATTGGCACTGTCGCTGACCGACAGCCCAAGGCCAGAAAAGTAAAGCATGGCGAAATGACg  <  1:1442711/64‑1 (MQ=255) cAGGATTGGCACTGTCGCTGACCGACAGCCCAAGGCCAGAAAAGTAAAGCATGGCGAAATGACg  <  1:1528014/64‑1 (MQ=255) cAGGATTGGCACTGTCGCTGACCGACAGCCCAAGGCCAGAAAAGTAAAGCATGGCGAAATGACg  <  1:1717696/64‑1 (MQ=255) cAGGATTGGCACTGTCGCTGACCGACAGCCCAAGGCCAGAAAAGTAAAGCATGGCGAAATGACg  <  1:1778884/64‑1 (MQ=255) cAGGATTGGCACTGTCGCTGACCGACAGCCCAAGGCCAGAAAAGTAAAGCATGGCGAAATGACg  <  1:1822082/64‑1 (MQ=255) cAGGATTGGCACTGTCGCTGACCGACAGCCCAAGGCCAGAAAAGTAAAGCATGGCGAAATGACg  <  1:1834706/64‑1 (MQ=255) cAGGATTGGCACTGTCGCTGACCGACAGCCCAAGGCCAGAAAAGTAAAGCATGGCGAAATGACg  <  1:1134620/64‑1 (MQ=255) cAGGATTGGCACTGTCGCTGACCGACAGCCCAAGGCCAGAAAAGTAAAGCATGGCGAAATGACg  <  1:1993720/64‑1 (MQ=255) cAGGATTGGCACTGTCGCTGACCGACAGCCCAAGGCCAGAAAAGTAAAGCATGGCGAAATGACg  <  1:2063/64‑1 (MQ=255) cAGGATTGGCACTGTCGCTGACCGACAGCCCAAGGCCAGAAAAGTAAAGCATGGCGAAATGACg  <  1:2082671/64‑1 (MQ=255) cAGGATTGGCACTGTCGCTGACCGACAGCCCAAGGCCAGAAAAGTAAAGCATGGCGAAATGACg  <  1:2099796/64‑1 (MQ=255) cAGGATTGGCACTGTCGCTGACCGACAGCCCAAGGCCAGAAAAGTAAAGCATGGCGAAATGACg  <  1:2178099/64‑1 (MQ=255) cAGGATTGGCACTGTCGCTGACCGACAGCCCAAGGCCAGAAAAGTAAAGCATGGCGAAATGACg  <  1:2222402/64‑1 (MQ=255) cAGGATTGGCACTGTCGCTGACCGACAGCCCAAGGCCAGAAAAGTAAAGCATGGCGAAATGACg  <  1:2294969/64‑1 (MQ=255) cAGGATTGGCACTGTCGCTGACCGACAGCCCAAGGCCAGAAAAGTAAAGCATGGCGAAATGACg  <  1:2315279/64‑1 (MQ=255)  aGGATTGGCACTGTCGCTGACCGACAGCCCAAGGCCAGAAAAGTAAAGCATGGCGAAATGACg  <  1:69408/63‑1 (MQ=255)  aGGATTGGCACTGTCGCTGACCGACAGCCCAAGGCCAGAAAAGTAAAGCATGGCGAAATGACg  <  1:2171987/63‑1 (MQ=255)          cACTGTCGCTGACCGACAGCCCAAGGCCAGAAAAGTAAAGCATGGCGAAATGACg  <  1:1943328/55‑1 (MQ=255)                     aCCGACAGCCCAAGGCCAGAAAAGTAAAGCATGGCGAAATGACg  <  1:2079676/44‑1 (MQ=255)                                                                | CAGGATTGGCACTGTCGCTGACCGACAGCCCAAGGCCAGAAAAGTAAAGCATGGCGAAATGACG  >  W3110S.gb/4504550‑4504613

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑