Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	1169315	1169386	72	29 [0]	[0] 16	ycfJ	hypothetical protein

CGTGTTTGAACGGGGCCCGCAATACGCTCAGGTTGTTTCTGCAACCCCAATCAAGGAAACGG  >  W3110S.gb/1169253‑1169314                                                              | cGTGTTTGAACGGGGCCCGCAATACGCTCAGGTTGTTTCTGCAACCCCAATCAAGGAAACgg  <  1:2281125/62‑1 (MQ=255) cGTGTTTGAACGGGGCCCGCAATACGCTCAGGTTGTTTCTGCAACCCCAATCAAGGAAACgg  <  1:979211/62‑1 (MQ=255) cGTGTTTGAACGGGGCCCGCAATACGCTCAGGTTGTTTCTGCAACCCCAATCAAGGAAACgg  <  1:908264/62‑1 (MQ=255) cGTGTTTGAACGGGGCCCGCAATACGCTCAGGTTGTTTCTGCAACCCCAATCAAGGAAACgg  <  1:889148/62‑1 (MQ=255) cGTGTTTGAACGGGGCCCGCAATACGCTCAGGTTGTTTCTGCAACCCCAATCAAGGAAACgg  <  1:815340/62‑1 (MQ=255) cGTGTTTGAACGGGGCCCGCAATACGCTCAGGTTGTTTCTGCAACCCCAATCAAGGAAACgg  <  1:804668/62‑1 (MQ=255) cGTGTTTGAACGGGGCCCGCAATACGCTCAGGTTGTTTCTGCAACCCCAATCAAGGAAACgg  <  1:767983/62‑1 (MQ=255) cGTGTTTGAACGGGGCCCGCAATACGCTCAGGTTGTTTCTGCAACCCCAATCAAGGAAACgg  <  1:674338/62‑1 (MQ=255) cGTGTTTGAACGGGGCCCGCAATACGCTCAGGTTGTTTCTGCAACCCCAATCAAGGAAACgg  <  1:305937/62‑1 (MQ=255) cGTGTTTGAACGGGGCCCGCAATACGCTCAGGTTGTTTCTGCAACCCCAATCAAGGAAACgg  <  1:2527551/62‑1 (MQ=255) cGTGTTTGAACGGGGCCCGCAATACGCTCAGGTTGTTTCTGCAACCCCAATCAAGGAAACgg  <  1:2443568/62‑1 (MQ=255) cGTGTTTGAACGGGGCCCGCAATACGCTCAGGTTGTTTCTGCAACCCCAATCAAGGAAACgg  <  1:2442368/62‑1 (MQ=255) cGTGTTTGAACGGGGCCCGCAATACGCTCAGGTTGTTTCTGCAACCCCAATCAAGGAAACgg  <  1:1036698/62‑1 (MQ=255) cGTGTTTGAACGGGGCCCGCAATACGCTCAGGTTGTTTCTGCAACCCCAATCAAGGAAACgg  <  1:2132439/62‑1 (MQ=255) cGTGTTTGAACGGGGCCCGCAATACGCTCAGGTTGTTTCTGCAACCCCAATCAAGGAAACgg  <  1:2039950/62‑1 (MQ=255) cGTGTTTGAACGGGGCCCGCAATACGCTCAGGTTGTTTCTGCAACCCCAATCAAGGAAACgg  <  1:2038529/62‑1 (MQ=255) cGTGTTTGAACGGGGCCCGCAATACGCTCAGGTTGTTTCTGCAACCCCAATCAAGGAAACgg  <  1:1992817/62‑1 (MQ=255) cGTGTTTGAACGGGGCCCGCAATACGCTCAGGTTGTTTCTGCAACCCCAATCAAGGAAACgg  <  1:1880557/62‑1 (MQ=255) cGTGTTTGAACGGGGCCCGCAATACGCTCAGGTTGTTTCTGCAACCCCAATCAAGGAAACgg  <  1:1604354/62‑1 (MQ=255) cGTGTTTGAACGGGGCCCGCAATACGCTCAGGTTGTTTCTGCAACCCCAATCAAGGAAACgg  <  1:1586314/62‑1 (MQ=255) cGTGTTTGAACGGGGCCCGCAATACGCTCAGGTTGTTTCTGCAACCCCAATCAAGGAAACgg  <  1:1539045/62‑1 (MQ=255) cGTGTTTGAACGGGGCCCGCAATACGCTCAGGTTGTTTCTGCAACCCCAATCAAGGAAACgg  <  1:1319096/62‑1 (MQ=255) cGTGTTTGAACGGGGCCCGCAATACGCTCAGGTTGTTTCTGCAACCCCAATCAAGGAAACgg  <  1:1316076/62‑1 (MQ=255) cGTGTTTGAACGGGGCCCGCAATACGCTCAGGTTGTTTCTGCAACCCCAATCAAGGAAACgg  <  1:1185519/62‑1 (MQ=255) cGTGTTTGAACGGGGCCCGCAATACGCTCAGGTTGTTTCTGCAACCCCAATCAAGGAAACgg  <  1:1115960/62‑1 (MQ=255) cGTGTTTGAACGGGGCCCGCAATACGCTCAGGTTGTTTCTGCAACCCCAATCAAGGAAACgg  <  1:1062598/62‑1 (MQ=255)       tGAACGGGGCCCGCAATACGCTCAGGTTGTTTGTGCAACCCCAATCAAGGAAACgg  <  1:297977/56‑1 (MQ=255)       tGAACGGGGCCCGCAATACGCTCAGGTTGTTTCTGCAACCCCAATCAAGGAAACgg  <  1:2483413/56‑1 (MQ=255)         aaCGGGGCCCGCAATACGCTCAGGTTGTTTCTGAAACCCCAATCAAGGAAACgg  <  1:23599/54‑1 (MQ=255)                                                              | CGTGTTTGAACGGGGCCCGCAATACGCTCAGGTTGTTTCTGCAACCCCAATCAAGGAAACGG  >  W3110S.gb/1169253‑1169314

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑