Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	1432282	1432319	38	43 [0]	[0] 25	stfR	predicted tail fiber protein

GCCAAAGGCAGTAAAATCAGCCTATGACAATGCAGAGAAACGTCTGCAGAAAGACCAGAACGGCG  >  W3110S.gb/1432217‑1432281                                                                 | gCCAAAGGCAGTAAAATCAGCCTATGACAATGCAGAGAAACGTCTGCAGAAAGACCAGAACGgcg  <  1:2274185/65‑1 (MQ=255) gCCAAAGGCAGTAAAATCAGCCTATGACAATGCAGAGAAACGTCTGCAGAAAGACCAGAACGgcg  <  1:957495/65‑1 (MQ=255) gCCAAAGGCAGTAAAATCAGCCTATGACAATGCAGAGAAACGTCTGCAGAAAGACCAGAACGgcg  <  1:912676/65‑1 (MQ=255) gCCAAAGGCAGTAAAATCAGCCTATGACAATGCAGAGAAACGTCTGCAGAAAGACCAGAACGgcg  <  1:447322/65‑1 (MQ=255) gCCAAAGGCAGTAAAATCAGCCTATGACAATGCAGAGAAACGTCTGCAGAAAGACCAGAACGgcg  <  1:311420/65‑1 (MQ=255) gCCAAAGGCAGTAAAATCAGCCTATGACAATGCAGAGAAACGTCTGCAGAAAGACCAGAACGgcg  <  1:2443166/65‑1 (MQ=255) gCCAAAGGCAGTAAAATCAGCCTATGACAATGCAGAGAAACGTCTGCAGAAAGACCAGAACGgcg  <  1:2331516/65‑1 (MQ=255) gCCAAAGGCAGTAAAATCAGCCTATGACAATGCAGAGAAACGTCTGCAGAAAGACCAGAACGgcg  <  1:2324020/65‑1 (MQ=255) gCCAAAGGCAGTAAAATCAGCCTATGACAATGCAGAGAAACGTCTGCAGAAAGACCAGAACGgcg  <  1:2303653/65‑1 (MQ=255) gCCAAAGGCAGTAAAATCAGCCTATGACAATGCAGAGAAACGTCTGCAGAAAGACCAGAACGgcg  <  1:2262496/65‑1 (MQ=255) gCCAAAGGCAGTAAAATCAGCCTATGACAATGCAGAGAAACGTCTGCAGAAAGACCAGAACGgcg  <  1:2101912/65‑1 (MQ=255) gCCAAAGGCAGTAAAATCAGCCTATGACAATGCAGAGAAACGTCTGCAGAAAGACCAGAACGgcg  <  1:1818741/65‑1 (MQ=255) gCCAAAGGCAGTAAAATCAGCCTATGACAATGCAGAGAAACGTCTGCAGAAAGACCAGAACGgcg  <  1:1598418/65‑1 (MQ=255) gCCAAAGGCAGTAAAATCAGCCTATGACAATGCAGAGAAACGTCTGCAGAAAGACCAGAACGgcg  <  1:1175606/65‑1 (MQ=255) gCCAAAGGCAGTAAAATCAGCCTATGACAATGCAGAGAAACGTCTGCAGAAAGACCAGAACGgcg  <  1:1531766/65‑1 (MQ=255) gCCAAAGGCAGTAAAATCAGCCTATGACAATGCAGAGAAACGTCTGCAGAAAGACCAGAACGgcg  <  1:1476981/65‑1 (MQ=255) gCCAAAGGCAGTAAAATCAGCCTATGACAATGCAGAGAAACGTCTGCAGAAAGACCAGAACGgcg  <  1:146776/65‑1 (MQ=255) gCCAAAGGCAGTAAAATCAGCCTATGACAATGCAGAGAAACGTCTGCAGAAAGACCAGAACGgcg  <  1:1323777/65‑1 (MQ=255)  ccAAAGGCAGTAAAATCAGCCTATGACAATGCAGAGAAACGTCTGCAGAAAGACCAGAACGgcg  >  1:1325783/1‑64 (MQ=255)  ccAAAGGCAGTAAAATCAGCCTATGACAATGCAGAGAAACGTCTGCAGAAAGACCAGAACGgcg  >  1:1189680/1‑64 (MQ=255)  ccAAAGGCAGTAAAATCAGCCTATGACAATGCAGAGAAACGTCTGCAGAAAGACCAGAACGgcg  >  1:864741/1‑64 (MQ=255)  ccAAAGGCAGTAAAATCAGCCTATGACAATGCAGAGAAACGTCTGCAGAAAGACCAGAACGgcg  >  1:84342/1‑64 (MQ=255)  ccAAAGGCAGTAAAATCAGCCTATGACAATGCAGAGAAACGTCTGCAGAAAGACCAGAACGgcg  >  1:779351/1‑64 (MQ=255)  ccAAAGGCAGTAAAATCAGCCTATGACAATGCAGAGAAACGTCTGCAGAAAGACCAGAACGgcg  >  1:739240/1‑64 (MQ=255)  ccAAAGGCAGTAAAATCAGCCTATGACAATGCAGAGAAACGTCTGCAGAAAGACCAGAACGgcg  >  1:501531/1‑64 (MQ=255)  ccAAAGGCAGTAAAATCAGCCTATGACAATGCAGAGAAACGTCTGCAGAAAGACCAGAACGgcg  >  1:469081/1‑64 (MQ=255)  ccAAAGGCAGTAAAATCAGCCTATGACAATGCAGAGAAACGTCTGCAGAAAGACCAGAACGgcg  >  1:2499454/1‑64 (MQ=255)  ccAAAGGCAGTAAAATCAGCCTATGACAATGCAGAGAAACGTCTGCAGAAAGACCAGAACGgcg  >  1:2470462/1‑64 (MQ=255)  ccAAAGGCAGTAAAATCAGCCTATGACAATGCAGAGAAACGTCTGCAGAAAGACCAGAACGgcg  >  1:2451519/1‑64 (MQ=255)  ccAAAGGCAGTAAAATCAGCCTATGACAATGCAGAGAAACGTCTGCAGAAAGACCAGAACGgcg  >  1:1588146/1‑64 (MQ=255)  ccAAAGGCAGTAAAATCAGCCTATGACAATGCAGAGAAACGTCTGCAGAAAGACCAGAACGgcg  >  1:2405644/1‑64 (MQ=255)  ccAAAGGCAGTAAAATCAGCCTATGACAATGCAGAGAAACGTCTGCAGAAAGACCAGAACGgcg  >  1:1362182/1‑64 (MQ=255)  ccAAAGGCAGTAAAATCAGCCTATGACAATGCAGAGAAACGTCTGCAGAAAGACCAGAACGgcg  >  1:142872/1‑64 (MQ=255)  ccAAAGGCAGTAAAATCAGCCTATGACAATGCAGAGAAACGTCTGCAGAAAGACCAGAACGgcg  >  1:2316224/1‑64 (MQ=255)  ccAAAGGCAGTAAAATCAGCCTATGACAATGCAGAGAAACGTCTGCAGAAAGACCAGAACGgcg  >  1:2298767/1‑64 (MQ=255)  ccAAAGGCAGTAAAATCAGCCTATGACAATGCAGAGAAACGTCTGCAGAAAGACCAGAACGgcg  >  1:1087986/1‑64 (MQ=255)  ccAAAGGCAGTAAAATCAGCCTATGACAATGCAGAGAAACGTCTGCAGAAAGACCAGAACGgcg  >  1:2255700/1‑64 (MQ=255)  ccAAAGGCAGTAAAATCAGCCTATGACAATGCAGAGAAACGTCTGCAGAAAGACCAGAACGgcg  >  1:225008/1‑64 (MQ=255)  ccAAAGGCAGTAAAATCAGCCTATGACAATGCAGAGAAACGTCTGCAGAAAGACCAGAACGgcg  >  1:1504535/1‑64 (MQ=255)  ccAAAGGCAGTAAAATCAGCCTATGACAATGCAGAGAAACGTCTGCAGAAAGACCAGAACGgcg  >  1:1907072/1‑64 (MQ=255)      aGGCAGTAAAATCAGCCTATGACAATGCAGAGAAACGTCTGCAGAAAGACCAGAACGgcg  <  1:1318763/60‑1 (MQ=255)                    gCCTATGACAATGCAGAGAAACGTCTGCAGAAAGACCAGAACGgcg  <  1:1544898/46‑1 (MQ=255)                         tGACAATGCAGAGAAACGTCTGCAGAAAGACCAGAACGgcg  <  1:315194/41‑1 (MQ=255)                                                                 | GCCAAAGGCAGTAAAATCAGCCTATGACAATGCAGAGAAACGTCTGCAGAAAGACCAGAACGGCG  >  W3110S.gb/1432217‑1432281

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑