Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	1966031	1966041	11	20 [0]	[0] 8	flhA	predicted flagellar export pore protein

TGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATGGTC  >  W3110S.gb/1965966‑1966030                                                                 | tGACCCCCGCGGCGGTAGAAATCACCGGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATGGTc  >  1:2319276/1‑65 (MQ=255) tGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACGAGACCGTCGCCAATGGTc  >  1:141090/1‑65 (MQ=255) tGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATGGTc  >  1:1921737/1‑65 (MQ=255) tGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATGGTc  >  1:835089/1‑65 (MQ=255) tGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATGGTc  >  1:659396/1‑65 (MQ=255) tGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATGGTc  >  1:619662/1‑65 (MQ=255) tGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATGGTc  >  1:571365/1‑65 (MQ=255) tGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATGGTc  >  1:255327/1‑65 (MQ=255) tGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATGGTc  >  1:2261341/1‑65 (MQ=255) tGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATGGTc  >  1:2250107/1‑65 (MQ=255) tGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATGGTc  >  1:1929008/1‑65 (MQ=255) tGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATGGTc  >  1:1096246/1‑65 (MQ=255) tGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATGGTc  >  1:1786497/1‑65 (MQ=255) tGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATGGTc  >  1:1724789/1‑65 (MQ=255) tGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATGGTc  >  1:1679983/1‑65 (MQ=255) tGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATGGTc  >  1:1592323/1‑65 (MQ=255) tGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATGGTc  >  1:136524/1‑65 (MQ=255) tGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATGGTc  >  1:1332367/1‑65 (MQ=255) tGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATGGTc  >  1:1222995/1‑65 (MQ=255) tGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATGGTc  >  1:1214422/1‑65 (MQ=255)                                                                 | TGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATGGTC  >  W3110S.gb/1965966‑1966030

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑