Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	2003053	2003162	110	42 [0]	[0] 17	[fliZ]	[fliZ]

TTCATCAAGCAGCGTGTCCAGGCGGGAAATCTCGATTTTATTCACTATTTTGCCGTCGCGAACTA  >  W3110S.gb/2002988‑2003052                                                                 | ttCATCAAGCATCGTGTCCAGGCGGGAAATCTCGATTTTATTCACTATTTTGCCGTCGCGAACTa  <  1:1054528/65‑1 (MQ=255) ttCATCAAGCAGCGTGTCCAGGCGGGAAATCTCGATTTTATTCACTATTTTGCCGTCGCGAACTa  <  1:228574/65‑1 (MQ=255) ttCATCAAGCAGCGTGTCCAGGCGGGAAATCTCGATTTTATTCACTATTTTGCCGTCGCGAACTa  <  1:101825/65‑1 (MQ=255) ttCATCAAGCAGCGTGTCCAGGCGGGAAATCTCGATTTTATTCACTATTTTGCCGTCGCGAACTa  <  1:2027746/65‑1 (MQ=255) ttCATCAAGCAGCGTGTCCAGGCGGGAAATCTCGATTTTATTCACTATTTTGCCGTCGCGAACTa  <  1:203778/65‑1 (MQ=255) ttCATCAAGCAGCGTGTCCAGGCGGGAAATCTCGATTTTATTCACTATTTTGCCGTCGCGAACTa  <  1:2085863/65‑1 (MQ=255) ttCATCAAGCAGCGTGTCCAGGCGGGAAATCTCGATTTTATTCACTATTTTGCCGTCGCGAACTa  <  1:210106/65‑1 (MQ=255) ttCATCAAGCAGCGTGTCCAGGCGGGAAATCTCGATTTTATTCACTATTTTGCCGTCGCGAACTa  <  1:211564/65‑1 (MQ=255) ttCATCAAGCAGCGTGTCCAGGCGGGAAATCTCGATTTTATTCACTATTTTGCCGTCGCGAACTa  <  1:2140270/65‑1 (MQ=255) ttCATCAAGCAGCGTGTCCAGGCGGGAAATCTCGATTTTATTCACTATTTTGCCGTCGCGAACTa  <  1:2159098/65‑1 (MQ=255) ttCATCAAGCAGCGTGTCCAGGCGGGAAATCTCGATTTTATTCACTATTTTGCCGTCGCGAACTa  <  1:2213915/65‑1 (MQ=255) ttCATCAAGCAGCGTGTCCAGGCGGGAAATCTCGATTTTATTCACTATTTTGCCGTCGCGAACTa  <  1:2250992/65‑1 (MQ=255) ttCATCAAGCAGCGTGTCCAGGCGGGAAATCTCGATTTTATTCACTATTTTGCCGTCGCGAACTa  <  1:2024300/65‑1 (MQ=255) ttCATCAAGCAGCGTGTCCAGGCGGGAAATCTCGATTTTATTCACTATTTTGCCGTCGCGAACTa  <  1:2329708/65‑1 (MQ=255) ttCATCAAGCAGCGTGTCCAGGCGGGAAATCTCGATTTTATTCACTATTTTGCCGTCGCGAACTa  <  1:2358269/65‑1 (MQ=255) ttCATCAAGCAGCGTGTCCAGGCGGGAAATCTCGATTTTATTCACTATTTTGCCGTCGCGAACTa  <  1:2418740/65‑1 (MQ=255) ttCATCAAGCAGCGTGTCCAGGCGGGAAATCTCGATTTTATTCACTATTTTGCCGTCGCGAACTa  <  1:382447/65‑1 (MQ=255) ttCATCAAGCAGCGTGTCCAGGCGGGAAATCTCGATTTTATTCACTATTTTGCCGTCGCGAACTa  <  1:444521/65‑1 (MQ=255) ttCATCAAGCAGCGTGTCCAGGCGGGAAATCTCGATTTTATTCACTATTTTGCCGTCGCGAACTa  <  1:578477/65‑1 (MQ=255) ttCATCAAGCAGCGTGTCCAGGCGGGAAATCTCGATTTTATTCACTATTTTGCCGTCGCGAACTa  <  1:76019/65‑1 (MQ=255) ttCATCAAGCAGCGTGTCCAGGCGGGAAATCTCGATTTTATTCACTATTTTGCCGTCGCGAACTa  <  1:857176/65‑1 (MQ=255) ttCATCAAGCAGCGTGTCCAGGCGGGAAATCTCGATTTTATTCACTATTTTGCCGTCGCGAACTa  <  1:1943560/65‑1 (MQ=255) ttCATCAAGCAGCGTGTCCAGGCGGGAAATCTCGATTTTATTCACTATTTTGCCGTCGCGAACTa  <  1:102046/65‑1 (MQ=255) ttCATCAAGCAGCGTGTCCAGGCGGGAAATCTCGATTTTATTCACTATTTTGCCGTCGCGAACTa  <  1:1040691/65‑1 (MQ=255) ttCATCAAGCAGCGTGTCCAGGCGGGAAATCTCGATTTTATTCACTATTTTGCCGTCGCGAACTa  <  1:1052450/65‑1 (MQ=255) ttCATCAAGCAGCGTGTCCAGGCGGGAAATCTCGATTTTATTCACTATTTTGCCGTCGCGAACTa  <  1:1116044/65‑1 (MQ=255) ttCATCAAGCAGCGTGTCCAGGCGGGAAATCTCGATTTTATTCACTATTTTGCCGTCGCGAACTa  <  1:1134505/65‑1 (MQ=255) ttCATCAAGCAGCGTGTCCAGGCGGGAAATCTCGATTTTATTCACTATTTTGCCGTCGCGAACTa  <  1:1155538/65‑1 (MQ=255) ttCATCAAGCAGCGTGTCCAGGCGGGAAATCTCGATTTTATTCACTATTTTGCCGTCGCGAACTa  <  1:1204446/65‑1 (MQ=255) ttCATCAAGCAGCGTGTCCAGGCGGGAAATCTCGATTTTATTCACTATTTTGCCGTCGCGAACTa  <  1:1221558/65‑1 (MQ=255) ttCATCAAGCAGCGTGTCCAGGCGGGAAATCTCGATTTTATTCACTATTTTGCCGTCGCGAACTa  <  1:1524472/65‑1 (MQ=255) ttCATCAAGCAGCGTGTCCAGGCGGGAAATCTCGATTTTATTCACTATTTTGCCGTCGCGAACTa  <  1:165293/65‑1 (MQ=255) ttCATCAAGCAGCGTGTCCAGGCGGGAAATCTCGATTTTATTCACTATTTTGCCGTCGCGAACTa  <  1:1654649/65‑1 (MQ=255) ttCATCAAGCAGCGTGTCCAGGCGGGAAATCTCGATTTTATTCACTATTTTGCCGTCGCGAACTa  <  1:1703347/65‑1 (MQ=255) ttCATCAAGCAGCGTGTCCAGGCGGGAAATCTCGATTTTATTCACTATTTTGCCGTCGCGAACTa  <  1:173426/65‑1 (MQ=255) ttCATCAAGCAGCGTGTCCAGGCGGGAAATCTCGATTTTATTCACTATTTTGCCGTCGCGAACTa  <  1:1747882/65‑1 (MQ=255) ttCATCAAGCAGCGTGTCCAGGCGGGAAATCTCGATTTTATTCACTATTTTGCCGTCGCGAACTa  <  1:1810582/65‑1 (MQ=255) ttCATCAAGCAGCGTGTCCAGGCGGGAAATCTCGATTTTATTCACTATTTTGCCGTCGCGAACTa  <  1:194775/65‑1 (MQ=255) ttCATCAAGCAGCGTGTCCAGGCGGGAAATCTCGATTTTATTCACTATTTTGCCGGCGCGAACTa  <  1:1348203/65‑1 (MQ=255) ttCATCAAGCAGCGTGTCCAGGCGGGAAATCTCGACTTTATTCACTATTTTGCCGTCGCGAACTa  <  1:667072/65‑1 (MQ=255)                      gCGGGAAATCTCGATTTTATTCACTATTTTGCCGTCGCGAACTa  <  1:1467599/44‑1 (MQ=255)                        gggAAATCTCGATTTTATTCACTATTTTGCCGTCGCGAACTa  <  1:631280/42‑1 (MQ=255)                                                                 | TTCATCAAGCAGCGTGTCCAGGCGGGAAATCTCGATTTTATTCACTATTTTGCCGTCGCGAACTA  >  W3110S.gb/2002988‑2003052

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑