Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	2006507	2006516	10	21 [0]	[0] 43	fliD	flagellar filament capping protein

CGGCTAACTCATCGTTAAGCGGGATCCGTGATGCCATCAACAACGCAAAAGCAGGCGTAAGCGCA  >  W3110S.gb/2006442‑2006506                                                                 | cgGCTAACTCATCGTTAAGCGGGATCCGTGATGCCATCAACAACGCAAAAGCAGGCGTAAGCGCa  >  1:2154086/1‑65 (MQ=255) cgGCTAACTCATCGTTAAGCGGGATCCGTGATGCCATCAACAACGCAAAAGCAGGCGTAAGCGCa  >  1:976761/1‑65 (MQ=255) cgGCTAACTCATCGTTAAGCGGGATCCGTGATGCCATCAACAACGCAAAAGCAGGCGTAAGCGCa  >  1:921323/1‑65 (MQ=255) cgGCTAACTCATCGTTAAGCGGGATCCGTGATGCCATCAACAACGCAAAAGCAGGCGTAAGCGCa  >  1:789635/1‑65 (MQ=255) cgGCTAACTCATCGTTAAGCGGGATCCGTGATGCCATCAACAACGCAAAAGCAGGCGTAAGCGCa  >  1:649432/1‑65 (MQ=255) cgGCTAACTCATCGTTAAGCGGGATCCGTGATGCCATCAACAACGCAAAAGCAGGCGTAAGCGCa  >  1:490242/1‑65 (MQ=255) cgGCTAACTCATCGTTAAGCGGGATCCGTGATGCCATCAACAACGCAAAAGCAGGCGTAAGCGCa  >  1:36779/1‑65 (MQ=255) cgGCTAACTCATCGTTAAGCGGGATCCGTGATGCCATCAACAACGCAAAAGCAGGCGTAAGCGCa  >  1:2385235/1‑65 (MQ=255) cgGCTAACTCATCGTTAAGCGGGATCCGTGATGCCATCAACAACGCAAAAGCAGGCGTAAGCGCa  >  1:2318942/1‑65 (MQ=255) cgGCTAACTCATCGTTAAGCGGGATCCGTGATGCCATCAACAACGCAAAAGCAGGCGTAAGCGCa  >  1:2288742/1‑65 (MQ=255) cgGCTAACTCATCGTTAAGCGGGATCCGTGATGCCATCAACAACGCAAAAGCAGGCGTAAGCGCa  >  1:1281108/1‑65 (MQ=255) cgGCTAACTCATCGTTAAGCGGGATCCGTGATGCCATCAACAACGCAAAAGCAGGCGTAAGCGCa  >  1:2150640/1‑65 (MQ=255) cgGCTAACTCATCGTTAAGCGGGATCCGTGATGCCATCAACAACGCAAAAGCAGGCGTAAGCGCa  >  1:2004927/1‑65 (MQ=255) cgGCTAACTCATCGTTAAGCGGGATCCGTGATGCCATCAACAACGCAAAAGCAGGCGTAAGCGCa  >  1:1895492/1‑65 (MQ=255) cgGCTAACTCATCGTTAAGCGGGATCCGTGATGCCATCAACAACGCAAAAGCAGGCGTAAGCGCa  >  1:1877839/1‑65 (MQ=255) cgGCTAACTCATCGTTAAGCGGGATCCGTGATGCCATCAACAACGCAAAAGCAGGCGTAAGCGCa  >  1:1805924/1‑65 (MQ=255) cgGCTAACTCATCGTTAAGCGGGATCCGTGATGCCATCAACAACGCAAAAGCAGGCGTAAGCGCa  >  1:1706228/1‑65 (MQ=255) cgGCTAACTCATCGTTAAGCGGGATCCGTGATGCCATCAACAACGCAAAAGCAGGCGTAAGCGCa  >  1:1353959/1‑65 (MQ=255) cgGCTAACTCATCGTTAAGCGGGATCCGTGATGCCATCAACAACGCAAAAGCAGGCGTAAGCGCa  >  1:1348407/1‑65 (MQ=255) cgGCTAACTCATCGTTAAGCGGGATCCGTGATGCCATCAACAACGCAAAAGCAGGCGTAAGCGCa  >  1:1301232/1‑65 (MQ=255) cgGCTAACTCATCGTTAAGCGGGATCCGTGATGCCAGCAACAACGCAAAAGCAGGCGTAAGCGCa  >  1:2489191/1‑65 (MQ=255)                                                                 | CGGCTAACTCATCGTTAAGCGGGATCCGTGATGCCATCAACAACGCAAAAGCAGGCGTAAGCGCA  >  W3110S.gb/2006442‑2006506

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑