Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	2014945	2014983	39	33 [0]	[0] 11	fliE	flagellar basal‑body component

TTATTACGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATC  >  W3110S.gb/2014880‑2014944                                                                 | ttattaCGCACCTGAATCCCCATTTGCATGGAAACTGAGGCTTTTTGCATATCGGTCATCACATc  <  1:731232/65‑1 (MQ=255) ttattaCGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTTCATATCGGTCATCACATc  <  1:815641/65‑1 (MQ=255) ttattaCGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCTGTCATCACATc  <  1:620032/65‑1 (MQ=255) ttattaCGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATc  <  1:1911539/65‑1 (MQ=255) ttattaCGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATc  <  1:796164/65‑1 (MQ=255) ttattaCGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATc  <  1:793684/65‑1 (MQ=255) ttattaCGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATc  <  1:708416/65‑1 (MQ=255) ttattaCGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATc  <  1:504590/65‑1 (MQ=255) ttattaCGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATc  <  1:2513222/65‑1 (MQ=255) ttattaCGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATc  <  1:2397826/65‑1 (MQ=255) ttattaCGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATc  <  1:2387360/65‑1 (MQ=255) ttattaCGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATc  <  1:2134479/65‑1 (MQ=255) ttattaCGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATc  <  1:212672/65‑1 (MQ=255) ttattaCGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATc  <  1:2101892/65‑1 (MQ=255) ttattaCGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATc  <  1:2021000/65‑1 (MQ=255) ttattaCGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATc  <  1:200711/65‑1 (MQ=255) ttattaCGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATc  <  1:155906/65‑1 (MQ=255) ttattaCGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATc  <  1:1174659/65‑1 (MQ=255) ttattaCGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATc  <  1:1335664/65‑1 (MQ=255) ttattaCGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATc  <  1:1372529/65‑1 (MQ=255) ttattaCGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATc  <  1:140788/65‑1 (MQ=255) ttattaCGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATc  <  1:1493947/65‑1 (MQ=255) ttattaCGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATc  <  1:1552691/65‑1 (MQ=255) ttattaCGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATc  <  1:108947/65‑1 (MQ=255) ttattaCGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATc  <  1:1561893/65‑1 (MQ=255) ttattaCGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATc  <  1:1626692/65‑1 (MQ=255) ttattaCGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATc  <  1:1654305/65‑1 (MQ=255) ttattaCGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATc  <  1:1696008/65‑1 (MQ=255) ttattaCGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATc  <  1:1729928/65‑1 (MQ=255) ttattaCGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATc  <  1:1807205/65‑1 (MQ=255) ttattaCGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATc  <  1:1857500/65‑1 (MQ=255) ttattaCGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTAGCATATCGGTCATCACATc  <  1:479216/65‑1 (MQ=255)        gCACCTGAATCCCGATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATc  <  1:1511116/58‑1 (MQ=255)                                                                 | TTATTACGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATC  >  W3110S.gb/2014880‑2014944

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑