Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	2076497	2076539	43	26 [0]	[0] 5	flu	antigen 43 (Ag43) phase‑variable biofilm formation autotransporter

TGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTGCCC  >  W3110S.gb/2076432‑2076496                                                                 | tgcCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCCCCTCATCCCGTGccc  >  1:635929/1‑65 (MQ=255) tgcCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTGccc  >  1:2248786/1‑65 (MQ=255) tgcCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTGccc  >  1:959554/1‑65 (MQ=255) tgcCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTGccc  >  1:926039/1‑65 (MQ=255) tgcCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTGccc  >  1:874535/1‑65 (MQ=255) tgcCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTGccc  >  1:788348/1‑65 (MQ=255) tgcCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTGccc  >  1:760545/1‑65 (MQ=255) tgcCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTGccc  >  1:751099/1‑65 (MQ=255) tgcCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTGccc  >  1:675308/1‑65 (MQ=255) tgcCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTGccc  >  1:436141/1‑65 (MQ=255) tgcCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTGccc  >  1:2419031/1‑65 (MQ=255) tgcCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTGccc  >  1:2327298/1‑65 (MQ=255) tgcCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTGccc  >  1:2304049/1‑65 (MQ=255) tgcCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTGccc  >  1:101725/1‑65 (MQ=255) tgcCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTGccc  >  1:1941051/1‑65 (MQ=255) tgcCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTGccc  >  1:1810420/1‑65 (MQ=255) tgcCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTGccc  >  1:176274/1‑65 (MQ=255) tgcCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTGccc  >  1:1742787/1‑65 (MQ=255) tgcCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTGccc  >  1:1588860/1‑65 (MQ=255) tgcCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTGccc  >  1:1538692/1‑65 (MQ=255) tgcCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTGccc  >  1:1412130/1‑65 (MQ=255) tgcCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTGccc  >  1:132601/1‑65 (MQ=255) tgcCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTGccc  >  1:1252800/1‑65 (MQ=255) tgcCGGTTTCCGTCTGGGCACCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTGccc  >  1:2054004/1‑65 (MQ=255) tgcCGGTTTCCGTCTGGGCACCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTGccc  >  1:1959187/1‑65 (MQ=255) tgcCGGTTTCCGACTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTGccc  >  1:1684030/1‑65 (MQ=255)                                                                 | TGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTGCCC  >  W3110S.gb/2076432‑2076496

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑