Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	2444148	2444156	9	31 [0]	[0] 10	flk	predicted flagella assembly protein

TATCCAGCAAAAATATGGTCTTTCTGCGCAATCATCGCTTTCTTCTGCCCAGGCCG  >  W3110S.gb/2444157‑2444212 |                                                        tatCCAGCAAAAATATGGTCTTTCTGCGCAATCATCGCTTTCTTCTGCCCAGGCCg  <  1:1374598/56‑1 (MQ=255) tatCCAGCAAAAATATGGTCTTTCTGCGCAATCATCGCTTTCTTCTGCCCAGGCCg  <  1:2058887/56‑1 (MQ=255) tatCCAGCAAAAATATGGTCTTTCTGCGCAATCATCGCTTTCTTCTGCCCAGGCCg  <  1:2063707/56‑1 (MQ=255) tatCCAGCAAAAATATGGTCTTTCTGCGCAATCATCGCTTTCTTCTGCCCAGGCCg  <  1:2236884/56‑1 (MQ=255) tatCCAGCAAAAATATGGTCTTTCTGCGCAATCATCGCTTTCTTCTGCCCAGGCCg  <  1:2266985/56‑1 (MQ=255) tatCCAGCAAAAATATGGTCTTTCTGCGCAATCATCGCTTTCTTCTGCCCAGGCCg  <  1:2267117/56‑1 (MQ=255) tatCCAGCAAAAATATGGTCTTTCTGCGCAATCATCGCTTTCTTCTGCCCAGGCCg  <  1:647390/56‑1 (MQ=255) tatCCAGCAAAAATATGGTCTTTCTGCGCAATCATCGCTTTCTTCTGCCCAGGCCg  <  1:777625/56‑1 (MQ=255) tatCCAGCAAAAATATGGTCTTTCTGCGCAATCATCGCTTTCTTCTGCCCAGGCCg  <  1:884104/56‑1 (MQ=255) tatCCAGCAAAAATATGGTCTTTCTGCCCAATCATCGCTTTCTTCTGCCCAGGCCg  <  1:116410/56‑1 (MQ=255) |                                                        TATCCAGCAAAAATATGGTCTTTCTGCGCAATCATCGCTTTCTTCTGCCCAGGCCG  >  W3110S.gb/2444157‑2444212

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑