Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	2472450	2472483	34	24 [0]	[0] 8	intS	predicted prophage CPS‑53 integrase

GCGAGGTTTTCCGTTACGCTATTGTCACCGGAAGGGCTAAATATAACCCGGCACCTGACCTTGCT  >  W3110S.gb/2472484‑2472548 |                                                                 gcgAGGTTTTCCGTTACGCTATTGTCACCGGAAGGGCTAAATATAACCCGGCACCTGACCTTGCt  >  1:1185325/1‑65 (MQ=255) gcgAGGTTTTCCGTTACGCTATTGTCACCGGAAGGGCTAAATATAACCCGGCACCTGACCTTGCt  >  1:1231516/1‑65 (MQ=255) gcgAGGTTTTCCGTTACGCTATTGTCACCGGAAGGGCTAAATATAACCCGGCACCTGACCTTGCt  >  1:1243927/1‑65 (MQ=255) gcgAGGTTTTCCGTTACGCTATTGTCACCGGAAGGGCTAAATATAACCCGGCACCTGACCTTGCt  >  1:1317650/1‑65 (MQ=255) gcgAGGTTTTCCGTTACGCTATTGTCACCGGAAGGGCTAAATATAACCCGGCACCTGACCTTGCt  >  1:1685261/1‑65 (MQ=255) gcgAGGTTTTCCGTTACGCTATTGTCACCGGAAGGGCTAAATATAACCCGGCACCTGACCTTGCt  >  1:2328719/1‑65 (MQ=255) gcgAGGTTTTCCGTTACGCTATTGTCACCGGAAGGGCTAAATATAACCCGGCACCTGACCTTGCt  >  1:341854/1‑65 (MQ=255) gcgAGGTTTTACTTTACGCTATTGTCACCGGAAGGGCTAAATATAACCCGGCACCTGACCTTGCt  >  1:1021780/1‑65 (MQ=255) |                                                                 GCGAGGTTTTCCGTTACGCTATTGTCACCGGAAGGGCTAAATATAACCCGGCACCTGACCTTGCT  >  W3110S.gb/2472484‑2472548

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑