Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	3961989	3961994	6	16 [0]	[0] 27	yhjH	EAL domain containing protein involved in flagellar function

TAAGCTGCCTCATTTTCCGCCTGGCTGGACTATCTTTAGGACTGGCACAGGAAGAATATGAGGAA  >  W3110S.gb/3961995‑3962059 |                                                                 taAGCTGCCTCATTTTCCGCCTGGCTGGACTATCTTTAGGACTGGCACAGgaaga            >  1:2388230/1‑55 (MQ=255) taAGCTGCCTCATTTTCCGCCTGGCTGGACTATCTTTAGGACTGGCACAGGAAGAATATGAgg    >  1:344323/1‑63 (MQ=255) taAGCTGCCTCATTTTCCGCCTGGCTGGACTATCTTTAGGACTGGCACAGGAAGAATATGAGGaa  >  1:2034617/1‑65 (MQ=255) taAGCTGCCTCATTTTCCGCCTGGCTGGACTATCTTTAGGACTGGCACAGGAAGAATATGAGGaa  >  1:936073/1‑65 (MQ=255) taAGCTGCCTCATTTTCCGCCTGGCTGGACTATCTTTAGGACTGGCACAGGAAGAATATGAGGaa  >  1:445093/1‑65 (MQ=255) taAGCTGCCTCATTTTCCGCCTGGCTGGACTATCTTTAGGACTGGCACAGGAAGAATATGAGGaa  >  1:410546/1‑65 (MQ=255) taAGCTGCCTCATTTTCCGCCTGGCTGGACTATCTTTAGGACTGGCACAGGAAGAATATGAGGaa  >  1:2499858/1‑65 (MQ=255) taAGCTGCCTCATTTTCCGCCTGGCTGGACTATCTTTAGGACTGGCACAGGAAGAATATGAGGaa  >  1:247999/1‑65 (MQ=255) taAGCTGCCTCATTTTCCGCCTGGCTGGACTATCTTTAGGACTGGCACAGGAAGAATATGAGGaa  >  1:2414754/1‑65 (MQ=255) taAGCTGCCTCATTTTCCGCCTGGCTGGACTATCTTTAGGACTGGCACAGGAAGAATATGAGGaa  >  1:2375425/1‑65 (MQ=255) taAGCTGCCTCATTTTCCGCCTGGCTGGACTATCTTTAGGACTGGCACAGGAAGAATATGAGGaa  >  1:2309417/1‑65 (MQ=255) taAGCTGCCTCATTTTCCGCCTGGCTGGACTATCTTTAGGACTGGCACAGGAAGAATATGAGGaa  >  1:2301940/1‑65 (MQ=255) taAGCTGCCTCATTTTCCGCCTGGCTGGACTATCTTTAGGACTGGCACAGGAAGAATATGAGGaa  >  1:215388/1‑65 (MQ=255) taAGCTGCCTCATTTTCCGCCTGGCTGGACTATCTTTAGGACTGGCACAGGAAGAATATGAGGaa  >  1:2142204/1‑65 (MQ=255) taAGCTGCCTCATTTTCCGCCTGGCTGGACTATCTTTAGGACTGGCACAGGAAGAATATGAGGaa  >  1:1039677/1‑65 (MQ=255) taAGCTGCCTCATTTTCCGCCTGGCTGGACTATCTTTAGGACTGGCACAGGAAGAATATGAGGaa  >  1:1925038/1‑65 (MQ=255) taAGCTGCCTCATTTTCCGCCTGGCTGGACTATCTTTAGGACTGGCACAGGAAGAATATGAGGaa  >  1:1873946/1‑65 (MQ=255) taAGCTGCCTCATTTTCCGCCTGGCTGGACTATCTTTAGGACTGGCACAGGAAGAATATGAGGaa  >  1:168427/1‑65 (MQ=255) taAGCTGCCTCATTTTCCGCCTGGCTGGACTATCTTTAGGACTGGCACAGGAAGAATATGAGGaa  >  1:1683756/1‑65 (MQ=255) taAGCTGCCTCATTTTCCGCCTGGCTGGACTATCTTTAGGACTGGCACAGGAAGAATATGAGGaa  >  1:1356642/1‑65 (MQ=255) taAGCTGCCTCATTTTCCGCCTGGCTGGACTATCTTTAGGACTGGCACAGGAAGAATATGAGGaa  >  1:1265016/1‑65 (MQ=255) taAGCTGCCTCATTTTCCGCCTGGCTGGACTATCTTTAGGACTGGCACAGGAAGAATATGAGGaa  >  1:1263401/1‑65 (MQ=255) taAGCTGCCTCATTTTCCGCCTGGCTGGACTATCTTTAGGACTGGCACAGGAAGAATATGAGGaa  >  1:1163248/1‑65 (MQ=255) taAGCTGCCTCATTTTCCGCCTGGCTGGACTATCTTTAGGACTGGCACAGGAAGAATATGAGGaa  >  1:1070817/1‑65 (MQ=255) taAGCTGCCTCATTTTCCGCCTGGCTGGACTATCTTTAGGACTGGCACAGGAAGAATATGAGGa   >  1:175033/1‑64 (MQ=255) taAGCTGCCTCATTTTCCGCCTGGCTGGACTATCTTTAGGACTGGCACAGGAAGAATATGAGGa   >  1:1502766/1‑64 (MQ=255) taAGCTGCCTCATTTTCCGCCTGGCTGGACTATCTTTAGGACTGGCACAGGAAGAATATGAGGa   >  1:1374314/1‑64 (MQ=255) |                                                                 TAAGCTGCCTCATTTTCCGCCTGGCTGGACTATCTTTAGGACTGGCACAGGAAGAATATGAGGAA  >  W3110S.gb/3961995‑3962059

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑