Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	4041400	4041425	26	5 [0]	[0] 41	livJ	leucine/isoleucine/valine transporter subunit

GCGGTTATCACCCGGAAATGGGGCAAATCCTGCGTCAGGCACGCGCGGCAGGGCTGAAAACTC  >  W3110S.gb/4041426‑4041488 |                                                               gcggTTATCACCCGGAAATGGGTCAAATCCTGCGTCAGGCACGCGCGGCAGGGCTGAAAACTc  <  1:2431149/63‑1 (MQ=255) gcggTTATCACCCGGAAATGGGGCAAATCCTGCGTCAGGCACGCGCGGCAGGGCTGAAAACTc  <  1:29224/63‑1 (MQ=255) gcggTTATCACCCGGAAATGGGGCAAATCCTGCGTCAGGCACGCGCGGCAGGGCTGAAAACTc  <  1:2166030/63‑1 (MQ=255) gcggTTATCACCCGGAAATGGGGCAAATCCTGCGTCAGGCACGCGCGGCAGGGCTGAAAACTc  <  1:218845/63‑1 (MQ=255) gcggTTATCACCCGGAAATGGGGCAAATCCTGCGTCAGGCACGCGCGGCAGGGCTGAAAACTc  <  1:2265692/63‑1 (MQ=255) gcggTTATCACCCGGAAATGGGGCAAATCCTGCGTCAGGCACGCGCGGCAGGGCTGAAAACTc  <  1:2299599/63‑1 (MQ=255) gcggTTATCACCCGGAAATGGGGCAAATCCTGCGTCAGGCACGCGCGGCAGGGCTGAAAACTc  <  1:2470848/63‑1 (MQ=255) gcggTTATCACCCGGAAATGGGGCAAATCCTGCGTCAGGCACGCGCGGCAGGGCTGAAAACTc  <  1:25598/63‑1 (MQ=255) gcggTTATCACCCGGAAATGGGGCAAATCCTGCGTCAGGCACGCGCGGCAGGGCTGAAAACTc  <  1:26269/63‑1 (MQ=255) gcggTTATCACCCGGAAATGGGGCAAATCCTGCGTCAGGCACGCGCGGCAGGGCTGAAAACTc  <  1:282224/63‑1 (MQ=255) gcggTTATCACCCGGAAATGGGGCAAATCCTGCGTCAGGCACGCGCGGCAGGGCTGAAAACTc  <  1:287613/63‑1 (MQ=255) gcggTTATCACCCGGAAATGGGGCAAATCCTGCGTCAGGCACGCGCGGCAGGGCTGAAAACTc  <  1:2029280/63‑1 (MQ=255) gcggTTATCACCCGGAAATGGGGCAAATCCTGCGTCAGGCACGCGCGGCAGGGCTGAAAACTc  <  1:379594/63‑1 (MQ=255) gcggTTATCACCCGGAAATGGGGCAAATCCTGCGTCAGGCACGCGCGGCAGGGCTGAAAACTc  <  1:42396/63‑1 (MQ=255) gcggTTATCACCCGGAAATGGGGCAAATCCTGCGTCAGGCACGCGCGGCAGGGCTGAAAACTc  <  1:686131/63‑1 (MQ=255) gcggTTATCACCCGGAAATGGGGCAAATCCTGCGTCAGGCACGCGCGGCAGGGCTGAAAACTc  <  1:698462/63‑1 (MQ=255) gcggTTATCACCCGGAAATGGGGCAAATCCTGCGTCAGGCACGCGCGGCAGGGCTGAAAACTc  <  1:70796/63‑1 (MQ=255) gcggTTATCACCCGGAAATGGGGCAAATCCTGCGTCAGGCACGCGCGGCAGGGCTGAAAACTc  <  1:713205/63‑1 (MQ=255) gcggTTATCACCCGGAAATGGGGCAAATCCTGCGTCAGGCACGCGCGGCAGGGCTGAAAACTc  <  1:727752/63‑1 (MQ=255) gcggTTATCACCCGGAAATGGGGCAAATCCTGCGTCAGGCACGCGCGGCAGGGCTGAAAACTc  <  1:853808/63‑1 (MQ=255) gcggTTATCACCCGGAAATGGGGCAAATCCTGCGTCAGGCACGCGCGGCAGGGCTGAAAACTc  <  1:908273/63‑1 (MQ=255) gcggTTATCACCCGGAAATGGGGCAAATCCTGCGTCAGGCACGCGCGGCAGGGCTGAAAACTc  <  1:141122/63‑1 (MQ=255) gcggTTATCACCCGGAAATGGGGCAAATCCTGCGTCAGGCACGCGCGGCAGGGCTGAAAACTc  <  1:1132188/63‑1 (MQ=255) gcggTTATCACCCGGAAATGGGGCAAATCCTGCGTCAGGCACGCGCGGCAGGGCTGAAAACTc  <  1:114035/63‑1 (MQ=255) gcggTTATCACCCGGAAATGGGGCAAATCCTGCGTCAGGCACGCGCGGCAGGGCTGAAAACTc  <  1:1195252/63‑1 (MQ=255) gcggTTATCACCCGGAAATGGGGCAAATCCTGCGTCAGGCACGCGCGGCAGGGCTGAAAACTc  <  1:1238684/63‑1 (MQ=255) gcggTTATCACCCGGAAATGGGGCAAATCCTGCGTCAGGCACGCGCGGCAGGGCTGAAAACTc  <  1:1245794/63‑1 (MQ=255) gcggTTATCACCCGGAAATGGGGCAAATCCTGCGTCAGGCACGCGCGGCAGGGCTGAAAACTc  <  1:1248392/63‑1 (MQ=255) gcggTTATCACCCGGAAATGGGGCAAATCCTGCGTCAGGCACGCGCGGCAGGGCTGAAAACTc  <  1:1304055/63‑1 (MQ=255) gcggTTATCACCCGGAAATGGGGCAAATCCTGCGTCAGGCACGCGCGGCAGGGCTGAAAACTc  <  1:1393699/63‑1 (MQ=255) gcggTTATCACCCGGAAATGGGGCAAATCCTGCGTCAGGCACGCGCGGCAGGGCTGAAAACTc  <  1:1409920/63‑1 (MQ=255) gcggTTATCACCCGGAAATGGGGCAAATCCTGCGTCAGGCACGCGCGGCAGGGCTGAAAACTc  <  1:1015050/63‑1 (MQ=255) gcggTTATCACCCGGAAATGGGGCAAATCCTGCGTCAGGCACGCGCGGCAGGGCTGAAAACTc  <  1:1456047/63‑1 (MQ=255) gcggTTATCACCCGGAAATGGGGCAAATCCTGCGTCAGGCACGCGCGGCAGGGCTGAAAACTc  <  1:1471376/63‑1 (MQ=255) gcggTTATCACCCGGAAATGGGGCAAATCCTGCGTCAGGCACGCGCGGCAGGGCTGAAAACTc  <  1:1516463/63‑1 (MQ=255) gcggTTATCACCCGGAAATGGGGCAAATCCTGCGTCAGGCACGCGCGGCAGGGCTGAAAACTc  <  1:1623281/63‑1 (MQ=255) gcggTTATCACCCGGAAATGGGGCAAATCCTGCGTCAGGCACGCGCGGCAGGGCTGAAAACTc  <  1:1629235/63‑1 (MQ=255) gcggTTATCACCCGGAAATGGGGCAAATCCTGCGTCAGGCACGCGCGGCAGGGCTGAAAACTc  <  1:1647910/63‑1 (MQ=255) gcggTTATCACCCGGAAATGGGGCAAATCCTGCGTCAGGCACGCGCGGCAGGGCTGAAAACTc  <  1:1886996/63‑1 (MQ=255) gcggTTATCACCCGGAAATGGGGCAAATCCTGCGTCAGGCACGCGCGGCAGGGCTGAAAACTc  <  1:19099/63‑1 (MQ=255) gcggTTATCACCCGGAAATGGGGCAAATCCTGCGTCAGGCACGCGCGGCAGGGCTGAAAACTc  <  1:1966460/63‑1 (MQ=255) |                                                               GCGGTTATCACCCGGAAATGGGGCAAATCCTGCGTCAGGCACGCGCGGCAGGGCTGAAAACTC  >  W3110S.gb/4041426‑4041488

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑