Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	4460945	4461079	135	11 [0]	[0] 30	mpl	UDP‑N‑acetylmuramate:L‑alanyl‑gamma‑D‑glutamyl‑ meso‑diaminopimelate ligase

ACCATCTGGTGCGTATCGTTCCGGGGCAGGGCCGTATTATCTGGCCGGAAAATGACATCAACCT  >  W3110S.gb/4461080‑4461143 |                                                                accaTCTGGTGCGTATCGTTGCGGGGCAGGGCCGTATTATCTGGCCGGAAAATGACATCAACCt  <  1:2519013/64‑1 (MQ=255) accaTCTGGTGCGTATCGTTCCGGGGCAGGGCCGTATTATCTGGCCGGAAAATGACATCAACCt  <  1:2113522/64‑1 (MQ=255) accaTCTGGTGCGTATCGTTCCGGGGCAGGGCCGTATTATCTGGCCGGAAAATGACATCAACCt  <  1:970184/64‑1 (MQ=255) accaTCTGGTGCGTATCGTTCCGGGGCAGGGCCGTATTATCTGGCCGGAAAATGACATCAACCt  <  1:878132/64‑1 (MQ=255) accaTCTGGTGCGTATCGTTCCGGGGCAGGGCCGTATTATCTGGCCGGAAAATGACATCAACCt  <  1:874009/64‑1 (MQ=255) accaTCTGGTGCGTATCGTTCCGGGGCAGGGCCGTATTATCTGGCCGGAAAATGACATCAACCt  <  1:651699/64‑1 (MQ=255) accaTCTGGTGCGTATCGTTCCGGGGCAGGGCCGTATTATCTGGCCGGAAAATGACATCAACCt  <  1:484704/64‑1 (MQ=255) accaTCTGGTGCGTATCGTTCCGGGGCAGGGCCGTATTATCTGGCCGGAAAATGACATCAACCt  <  1:414970/64‑1 (MQ=255) accaTCTGGTGCGTATCGTTCCGGGGCAGGGCCGTATTATCTGGCCGGAAAATGACATCAACCt  <  1:384858/64‑1 (MQ=255) accaTCTGGTGCGTATCGTTCCGGGGCAGGGCCGTATTATCTGGCCGGAAAATGACATCAACCt  <  1:377633/64‑1 (MQ=255) accaTCTGGTGCGTATCGTTCCGGGGCAGGGCCGTATTATCTGGCCGGAAAATGACATCAACCt  <  1:368226/64‑1 (MQ=255) accaTCTGGTGCGTATCGTTCCGGGGCAGGGCCGTATTATCTGGCCGGAAAATGACATCAACCt  <  1:307055/64‑1 (MQ=255) accaTCTGGTGCGTATCGTTCCGGGGCAGGGCCGTATTATCTGGCCGGAAAATGACATCAACCt  <  1:2534427/64‑1 (MQ=255) accaTCTGGTGCGTATCGTTCCGGGGCAGGGCCGTATTATCTGGCCGGAAAATGACATCAACCt  <  1:2498461/64‑1 (MQ=255) accaTCTGGTGCGTATCGTTCCGGGGCAGGGCCGTATTATCTGGCCGGAAAATGACATCAACCt  <  1:2180239/64‑1 (MQ=255) accaTCTGGTGCGTATCGTTCCGGGGCAGGGCCGTATTATCTGGCCGGAAAATGACATCAACCt  <  1:1030627/64‑1 (MQ=255) accaTCTGGTGCGTATCGTTCCGGGGCAGGGCCGTATTATCTGGCCGGAAAATGACATCAACCt  <  1:2055767/64‑1 (MQ=255) accaTCTGGTGCGTATCGTTCCGGGGCAGGGCCGTATTATCTGGCCGGAAAATGACATCAACCt  <  1:1996501/64‑1 (MQ=255) accaTCTGGTGCGTATCGTTCCGGGGCAGGGCCGTATTATCTGGCCGGAAAATGACATCAACCt  <  1:1940653/64‑1 (MQ=255) accaTCTGGTGCGTATCGTTCCGGGGCAGGGCCGTATTATCTGGCCGGAAAATGACATCAACCt  <  1:1930656/64‑1 (MQ=255) accaTCTGGTGCGTATCGTTCCGGGGCAGGGCCGTATTATCTGGCCGGAAAATGACATCAACCt  <  1:1801583/64‑1 (MQ=255) accaTCTGGTGCGTATCGTTCCGGGGCAGGGCCGTATTATCTGGCCGGAAAATGACATCAACCt  <  1:176457/64‑1 (MQ=255) accaTCTGGTGCGTATCGTTCCGGGGCAGGGCCGTATTATCTGGCCGGAAAATGACATCAACCt  <  1:1763673/64‑1 (MQ=255) accaTCTGGTGCGTATCGTTCCGGGGCAGGGCCGTATTATCTGGCCGGAAAATGACATCAACCt  <  1:1616408/64‑1 (MQ=255) accaTCTGGTGCGTATCGTTCCGGGGCAGGGCCGTATTATCTGGCCGGAAAATGACATCAACCt  <  1:160032/64‑1 (MQ=255) accaTCTGGTGCGTATCGTTCCGGGGCAGGGCCGTATTATCTGGCCGGAAAATGACATCAACCt  <  1:1423531/64‑1 (MQ=255) accaTCTGGTGCGTATCGTTCCGGGGCAGGGCCGTATTATCTGGCCGGAAAATGACATCAACCt  <  1:1404205/64‑1 (MQ=255) accaTCTGGTGCGTATCGTTCCGGGGCAGGGCCGTATTATCTGGCCGGAAAATGACATCAACCt  <  1:1371230/64‑1 (MQ=255) accaTCTGGTGCGTATCGTTCCGGGGCAGGGCCGTATTATCTGGCCGGAAAATGACATCAACCt  <  1:1103290/64‑1 (MQ=255) accaTCTGGTGCGTATCGTTCCGGGGCAGGGCCGTATTATCTGGCCGGAAAATGACATCAACCt  <  1:1093046/64‑1 (MQ=255) |                                                                ACCATCTGGTGCGTATCGTTCCGGGGCAGGGCCGTATTATCTGGCCGGAAAATGACATCAACCT  >  W3110S.gb/4461080‑4461143

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑