Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	4501658	4501679	22	15 [0]	[0] 35	intB	predicted integrase

CAATAAAAAGTGGTCTGAAGATCACGCCCATCGTGTGCTAAAAAGTCTTGAAGATAATCTTTT  >  W3110S.gb/4501680‑4501742 |                                                               cAATAAAAAGTGGTCTGAAGATCACGCCCATCGTGTGGTAAAAAGTCTTGa              >  1:463403/1‑51 (MQ=255) cAATAAAAAGTGGTCTGAAGATCACGCCCATCGTGTGCTAAAAAGTCTTGAAg            >  1:977483/1‑53 (MQ=255) cAATAAAAAGTGGTCTGAAGATCACGCCCATCGTGTGCTAAAAAGTCTTGAAGATAAt       >  1:1441384/1‑58 (MQ=255) cAATAAAAAGTGGTCTGAAGATCACGCCCATCGTGTGCTAAAAAGTCTTGAAGATAATCtttt  >  1:976668/1‑63 (MQ=255) cAATAAAAAGTGGTCTGAAGATCACGCCCATCGTGTGCTAAAAAGTCTTGAAGATAATCtttt  >  1:950092/1‑63 (MQ=255) cAATAAAAAGTGGTCTGAAGATCACGCCCATCGTGTGCTAAAAAGTCTTGAAGATAATCtttt  >  1:819895/1‑63 (MQ=255) cAATAAAAAGTGGTCTGAAGATCACGCCCATCGTGTGCTAAAAAGTCTTGAAGATAATCtttt  >  1:705526/1‑63 (MQ=255) cAATAAAAAGTGGTCTGAAGATCACGCCCATCGTGTGCTAAAAAGTCTTGAAGATAATCtttt  >  1:624576/1‑63 (MQ=255) cAATAAAAAGTGGTCTGAAGATCACGCCCATCGTGTGCTAAAAAGTCTTGAAGATAATCtttt  >  1:510830/1‑63 (MQ=255) cAATAAAAAGTGGTCTGAAGATCACGCCCATCGTGTGCTAAAAAGTCTTGAAGATAATCtttt  >  1:1915996/1‑63 (MQ=255) cAATAAAAAGTGGTCTGAAGATCACGCCCATCGTGTGCTAAAAAGTCTTGAAGATAATCtttt  >  1:252808/1‑63 (MQ=255) cAATAAAAAGTGGTCTGAAGATCACGCCCATCGTGTGCTAAAAAGTCTTGAAGATAATCtttt  >  1:2524128/1‑63 (MQ=255) cAATAAAAAGTGGTCTGAAGATCACGCCCATCGTGTGCTAAAAAGTCTTGAAGATAATCtttt  >  1:247425/1‑63 (MQ=255) cAATAAAAAGTGGTCTGAAGATCACGCCCATCGTGTGCTAAAAAGTCTTGAAGATAATCtttt  >  1:2427904/1‑63 (MQ=255) cAATAAAAAGTGGTCTGAAGATCACGCCCATCGTGTGCTAAAAAGTCTTGAAGATAATCtttt  >  1:2240888/1‑63 (MQ=255) cAATAAAAAGTGGTCTGAAGATCACGCCCATCGTGTGCTAAAAAGTCTTGAAGATAATCtttt  >  1:2145548/1‑63 (MQ=255) cAATAAAAAGTGGTCTGAAGATCACGCCCATCGTGTGCTAAAAAGTCTTGAAGATAATCtttt  >  1:2142318/1‑63 (MQ=255) cAATAAAAAGTGGTCTGAAGATCACGCCCATCGTGTGCTAAAAAGTCTTGAAGATAATCtttt  >  1:2099639/1‑63 (MQ=255) cAATAAAAAGTGGTCTGAAGATCACGCCCATCGTGTGCTAAAAAGTCTTGAAGATAATCtttt  >  1:1568967/1‑63 (MQ=255) cAATAAAAAGTGGTCTGAAGATCACGCCCATCGTGTGCTAAAAAGTCTTGAAGATAATCtttt  >  1:1342999/1‑63 (MQ=255) cAATAAAAAGTGGTCTGAAGATCACGCCCATCGTGTGCTAAAAAGTCTTGAAGATAATCtttt  >  1:1418093/1‑63 (MQ=255) cAATAAAAAGTGGTCTGAAGATCACGCCCATCGTGTGCTAAAAAGTCTTGAAGATAATCtttt  >  1:1454182/1‑63 (MQ=255) cAATAAAAAGTGGTCTGAAGATCACGCCCATCGTGTGCTAAAAAGTCTTGAAGATAATCtttt  >  1:1483044/1‑63 (MQ=255) cAATAAAAAGTGGTCTGAAGATCACGCCCATCGTGTGCTAAAAAGTCTTGAAGATAATCtttt  >  1:1494083/1‑63 (MQ=255) cAATAAAAAGTGGTCTGAAGATCACGCCCATCGTGTGCTAAAAAGTCTTGAAGATAATCtttt  >  1:1497668/1‑63 (MQ=255) cAATAAAAAGTGGTCTGAAGATCACGCCCATCGTGTGCTAAAAAGTCTTGAAGATAATCtttt  >  1:1565924/1‑63 (MQ=255) cAATAAAAAGTGGTCTGAAGATCACGCCCATCGTGTGCTAAAAAGTCTTGAAGATAATCtttt  >  1:1566298/1‑63 (MQ=255) cAATAAAAAGTGGTCTGAAGATCACGCCCATCGTGTGCTAAAAAGTCTTGAAGATAATCtttt  >  1:2002222/1‑63 (MQ=255) cAATAAAAAGTGGTCTGAAGATCACGCCCATCGTGTGCTAAAAAGTCTTGAAGATAATCtttt  >  1:158541/1‑63 (MQ=255) cAATAAAAAGTGGTCTGAAGATCACGCCCATCGTGTGCTAAAAAGTCTTGAAGATAATCtttt  >  1:1615838/1‑63 (MQ=255) cAATAAAAAGTGGTCTGAAGATCACGCCCATCGTGTGCTAAAAAGTCTTGAAGATAATCtttt  >  1:1765553/1‑63 (MQ=255) cAATAAAAAGTGGTCTGAAGATCACGCCCATCGTGTGCTAAAAAGTCTTGAAGATAATCtttt  >  1:1805760/1‑63 (MQ=255) cAATAAAAAGTGGTCTGAAGATCACGCCCATCGTGTGCTAAAAAGTCTTGAAGATAATCtttt  >  1:1899344/1‑63 (MQ=255) cAATAAAAAGTGGTCTGAAGATCACGCCCATCGTGTGCTAAAAAGTCTTGAAGATAATCtttt  >  1:1185597/1‑63 (MQ=255) cAATAAAAAGTGGTCTGAAGATCACGCCCATCGTGTGCTAAAAAGTCTTGAAGATAATCttt   >  1:1705092/1‑62 (MQ=255) |                                                               CAATAAAAAGTGGTCTGAAGATCACGCCCATCGTGTGCTAAAAAGTCTTGAAGATAATCTTTT  >  W3110S.gb/4501680‑4501742

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑