Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	4609238	4609260	23	25 [0]	[3] 30	bglJ	DNA‑binding transcriptional regulator

CGACCGACCGACTGAACAATCAGTGGTACATTAACCAAAGCCGGACGTTAAGCCCGACGGAGAGAGAAATATTGC  >  W3110S.gb/4609251‑4609325           |                                                                 cgaccgaccgacTGAACAATCAGTGGTACATTAACCAAAGCCGGACGTTAAGCCCGACGgagaga            <  1:1223721/65‑1 (MQ=255) cgaccgaccgacTGAACAATCAGTGGTACATTAACCAAAGCCGGACGTTAAGCCCGACGgagaga            <  1:826455/65‑1 (MQ=255) cgaccgaccgacTGAACAATCAGTGGTACATTAACCAAAGCCGGACGTTAAGCCCGACGgagaga            <  1:823481/65‑1 (MQ=255)           acTTAACAATCAGTGGTACATTAACCAAAGCCGGACGTTAAGCCCGACGGAGAGAGAAATATTgc  <  1:1050635/65‑1 (MQ=255)           acTGAACAATCAGTGGTACATTAACCAAAGCCGGACGTTAAGCCCGACGGAGAGAGAAATATTgc  <  1:85/65‑1 (MQ=255)           acTGAACAATCAGTGGTACATTAACCAAAGCCGGACGTTAAGCCCGACGGAGAGAGAAATATTgc  <  1:1031634/65‑1 (MQ=255)           acTGAACAATCAGTGGTACATTAACCAAAGCCGGACGTTAAGCCCGACGGAGAGAGAAATATTgc  <  1:743243/65‑1 (MQ=255)           acTGAACAATCAGTGGTACATTAACCAAAGCCGGACGTTAAGCCCGACGGAGAGAGAAATATTgc  <  1:581369/65‑1 (MQ=255)           acTGAACAATCAGTGGTACATTAACCAAAGCCGGACGTTAAGCCCGACGGAGAGAGAAATATTgc  <  1:520052/65‑1 (MQ=255)           acTGAACAATCAGTGGTACATTAACCAAAGCCGGACGTTAAGCCCGACGGAGAGAGAAATATTgc  <  1:389068/65‑1 (MQ=255)           acTGAACAATCAGTGGTACATTAACCAAAGCCGGACGTTAAGCCCGACGGAGAGAGAAATATTgc  <  1:2522429/65‑1 (MQ=255)           acTGAACAATCAGTGGTACATTAACCAAAGCCGGACGTTAAGCCCGACGGAGAGAGAAATATTgc  <  1:2445923/65‑1 (MQ=255)           acTGAACAATCAGTGGTACATTAACCAAAGCCGGACGTTAAGCCCGACGGAGAGAGAAATATTgc  <  1:2436077/65‑1 (MQ=255)           acTGAACAATCAGTGGTACATTAACCAAAGCCGGACGTTAAGCCCGACGGAGAGAGAAATATTgc  <  1:242706/65‑1 (MQ=255)           acTGAACAATCAGTGGTACATTAACCAAAGCCGGACGTTAAGCCCGACGGAGAGAGAAATATTgc  <  1:238633/65‑1 (MQ=255)           acTGAACAATCAGTGGTACATTAACCAAAGCCGGACGTTAAGCCCGACGGAGAGAGAAATATTgc  <  1:2358812/65‑1 (MQ=255)           acTGAACAATCAGTGGTACATTAACCAAAGCCGGACGTTAAGCCCGACGGAGAGAGAAATATTgc  <  1:2069681/65‑1 (MQ=255)           acTGAACAATCAGTGGTACATTAACCAAAGCCGGACGTTAAGCCCGACGGAGAGAGAAATATTgc  <  1:2065869/65‑1 (MQ=255)           acTGAACAATCAGTGGTACATTAACCAAAGCCGGACGTTAAGCCCGACGGAGAGAGAAATATTgc  <  1:1991741/65‑1 (MQ=255)           acTGAACAATCAGTGGTACATTAACCAAAGCCGGACGTTAAGCCCGACGGAGAGAGAAATATTgc  <  1:1963468/65‑1 (MQ=255)           acTGAACAATCAGTGGTACATTAACCAAAGCCGGACGTTAAGCCCGACGGAGAGAGAAATATTgc  <  1:1960478/65‑1 (MQ=255)           acTGAACAATCAGTGGTACATTAACCAAAGCCGGACGTTAAGCCCGACGGAGAGAGAAATATTgc  <  1:1956075/65‑1 (MQ=255)           acTGAACAATCAGTGGTACATTAACCAAAGCCGGACGTTAAGCCCGACGGAGAGAGAAATATTgc  <  1:1932734/65‑1 (MQ=255)           acTGAACAATCAGTGGTACATTAACCAAAGCCGGACGTTAAGCCCGACGGAGAGAGAAATATTgc  <  1:1898371/65‑1 (MQ=255)           acTGAACAATCAGTGGTACATTAACCAAAGCCGGACGTTAAGCCCGACGGAGAGAGAAATATTgc  <  1:1750712/65‑1 (MQ=255)           acTGAACAATCAGTGGTACATTAACCAAAGCCGGACGTTAAGCCCGACGGAGAGAGAAATATTgc  <  1:167757/65‑1 (MQ=255)           acTGAACAATCAGTGGTACATTAACCAAAGCCGGACGTTAAGCCCGACGGAGAGAGAAATATTgc  <  1:1515854/65‑1 (MQ=255)           acTGAACAATCAGTGGTACATTAACCAAAGCCGGACGTTAAGCCCGACGGAGAGAGAAATATTgc  <  1:1422395/65‑1 (MQ=255)           acTGAACAATCAGTGGTACATTAACCAAAGCCGGACGTTAAGCCCGACGGAGAGAGAAATATTgc  <  1:135359/65‑1 (MQ=255)           acTGAACAATCAGTGGTACATTAACCAAAGCCGGACGTTAAGCCCGACGGAGAGAGAAATATTgc  <  1:1125399/65‑1 (MQ=255)           |                                                                 CGACCGACCGACTGAACAATCAGTGGTACATTAACCAAAGCCGGACGTTAAGCCCGACGGAGAGAGAAATATTGC  >  W3110S.gb/4609251‑4609325

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑