Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	1142041	1142054	14	11 [3]	[0] 25	flgL	flagellar hook‑filament junction protein

AGAAAGGGAAATACGTCGGTGGAGCAGAAAGTATTAAACAACAGGTCGATGCTTCGCGTTCGATG  >  W3110S.gb/1142055‑1142119 |                                                                 agaAAGGGAAATACGTCGGTGGAGCAGAAAGTATTAAACAACATGTCGATGCTTCGCGTTCGATg  <  1:783945/65‑1 (MQ=255) agaAAGGGAAATACGTCGGTGGAGCAGAAAGTATTAAACAACAGGTCGATGCTTCGCGTTCGATg  <  1:2403514/65‑1 (MQ=255) agaAAGGGAAATACGTCGGTGGAGCAGAAAGTATTAAACAACAGGTCGATGCTTCGCGTTCGATg  <  1:96641/65‑1 (MQ=255) agaAAGGGAAATACGTCGGTGGAGCAGAAAGTATTAAACAACAGGTCGATGCTTCGCGTTCGATg  <  1:954075/65‑1 (MQ=255) agaAAGGGAAATACGTCGGTGGAGCAGAAAGTATTAAACAACAGGTCGATGCTTCGCGTTCGATg  <  1:901460/65‑1 (MQ=255) agaAAGGGAAATACGTCGGTGGAGCAGAAAGTATTAAACAACAGGTCGATGCTTCGCGTTCGATg  <  1:759939/65‑1 (MQ=255) agaAAGGGAAATACGTCGGTGGAGCAGAAAGTATTAAACAACAGGTCGATGCTTCGCGTTCGATg  <  1:684212/65‑1 (MQ=255) agaAAGGGAAATACGTCGGTGGAGCAGAAAGTATTAAACAACAGGTCGATGCTTCGCGTTCGATg  <  1:435312/65‑1 (MQ=255) agaAAGGGAAATACGTCGGTGGAGCAGAAAGTATTAAACAACAGGTCGATGCTTCGCGTTCGATg  <  1:382835/65‑1 (MQ=255) agaAAGGGAAATACGTCGGTGGAGCAGAAAGTATTAAACAACAGGTCGATGCTTCGCGTTCGATg  <  1:299044/65‑1 (MQ=255) agaAAGGGAAATACGTCGGTGGAGCAGAAAGTATTAAACAACAGGTCGATGCTTCGCGTTCGATg  <  1:2460390/65‑1 (MQ=255) agaAAGGGAAATACGTCGGTGGAGCAGAAAGTATTAAACAACAGGTCGATGCTTCGCGTTCGATg  <  1:2431882/65‑1 (MQ=255) agaAAGGGAAATACGTCGGTGGAGCAGAAAGTATTAAACAACAGGTCGATGCTTCGCGTTCGATg  <  1:1016944/65‑1 (MQ=255) agaAAGGGAAATACGTCGGTGGAGCAGAAAGTATTAAACAACAGGTCGATGCTTCGCGTTCGATg  <  1:2277624/65‑1 (MQ=255) agaAAGGGAAATACGTCGGTGGAGCAGAAAGTATTAAACAACAGGTCGATGCTTCGCGTTCGATg  <  1:2172304/65‑1 (MQ=255) agaAAGGGAAATACGTCGGTGGAGCAGAAAGTATTAAACAACAGGTCGATGCTTCGCGTTCGATg  <  1:2042758/65‑1 (MQ=255) agaAAGGGAAATACGTCGGTGGAGCAGAAAGTATTAAACAACAGGTCGATGCTTCGCGTTCGATg  <  1:1541293/65‑1 (MQ=255) agaAAGGGAAATACGTCGGTGGAGCAGAAAGTATTAAACAACAGGTCGATGCTTCGCGTTCGATg  <  1:1460767/65‑1 (MQ=255) agaAAGGGAAATACGTCGGTGGAGCAGAAAGTATTAAACAACAGGTCGATGCTTCGCGTTCGATg  <  1:1403571/65‑1 (MQ=255) agaAAGGGAAATACGTCGGTGGAGCAGAAAGTATTAAACAACAGGTCGATGCTTCGCGTTCGATg  <  1:1263348/65‑1 (MQ=255) agaAAGGGAAATACGTCGGTGGAGCAGAAAGTATTAAACAACAGGTCGATGCTTCGCGTTCGATg  <  1:1261097/65‑1 (MQ=255) agaAAGGGAAATACGTCGGTGGAGCAGAAAGTATTAAACAACAGGTCGATGCTTCGCGTTCGATg  <  1:1072875/65‑1 (MQ=255) agaAAGGGAAATACGTCGGTGGAGCAGAAAGTATTAAACAACAGGGCGATGCTTCGCGTTCGATg  <  1:2250090/65‑1 (MQ=255) agaAAGGGAAATACGTCGGTGGAGCAGAAAGTATTAAACAACAGGGCGATGCTTCGCGTTCGATg  <  1:908314/65‑1 (MQ=255) agaAAGGGAAATACGTCGGTGGAGCAGAAAGTACTAAACAACAGGTCGATGCTTCGCGTTCGATg  <  1:1347795/65‑1 (MQ=255) |                                                                 AGAAAGGGAAATACGTCGGTGGAGCAGAAAGTATTAAACAACAGGTCGATGCTTCGCGTTCGATG  >  W3110S.gb/1142055‑1142119

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑