Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	1191808	1191873	66	21 [0]	[0] 13	phoP	DNA‑binding response regulator in two‑component regulatory system with PhoQ

CGACAATCGCAATATCCGGTATATGTTCATTGAGATAATAATC  >  W3110S.gb/1191874‑1191916 |                                           cGACAATCGCAATATCCTGTATATGTTCATTGAGATAATAATc  <  1:576941/43‑1 (MQ=255) cGACAATCGCAATATCCGGTATATGTTCATTGAGATAATAATc  <  1:1101680/43‑1 (MQ=255) cGACAATCGCAATATCCGGTATATGTTCATTGAGATAATAATc  <  1:1270217/43‑1 (MQ=255) cGACAATCGCAATATCCGGTATATGTTCATTGAGATAATAATc  <  1:1496878/43‑1 (MQ=255) cGACAATCGCAATATCCGGTATATGTTCATTGAGATAATAATc  <  1:162565/43‑1 (MQ=255) cGACAATCGCAATATCCGGTATATGTTCATTGAGATAATAATc  <  1:1689854/43‑1 (MQ=255) cGACAATCGCAATATCCGGTATATGTTCATTGAGATAATAATc  <  1:1748030/43‑1 (MQ=255) cGACAATCGCAATATCCGGTATATGTTCATTGAGATAATAATc  <  1:1775172/43‑1 (MQ=255) cGACAATCGCAATATCCGGTATATGTTCATTGAGATAATAATc  <  1:225842/43‑1 (MQ=255) cGACAATCGCAATATCCGGTATATGTTCATTGAGATAATAATc  <  1:413601/43‑1 (MQ=255) cGACAATCGCAATATCCGGTATATGTTCATTGAGATAATAATc  <  1:667578/43‑1 (MQ=255) cGACAATCGCAATATCCGGTATATGTTCATTGAGATAATAATc  <  1:802623/43‑1 (MQ=255) cGACAATCGCAATATCCGGTATATGTTCATTGAGATAATAATc  <  1:852642/43‑1 (MQ=255) |                                           CGACAATCGCAATATCCGGTATATGTTCATTGAGATAATAATC  >  W3110S.gb/1191874‑1191916

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑