Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	1243616	1243711	96	30 [2]	[0] 33	[cvrA]	[cvrA]

GCGTTTTACTTAGCCCTGAAGCGTGATTTTTTTACATTTTAAGAACAGGATGACCGCTAATCGTC  >  W3110S.gb/1243712‑1243776 |                                                                 gCGTTTTACTTAGCCCTGAAGGGTGATTTTTTTACATTTTAAGAACAGGATGACCGCTAATCGTc  >  1:2483511/1‑65 (MQ=255) gCGTTTTACTTAGCCCTGAAGCGTGATTTTTTTACAttt                            >  1:1513624/1‑39 (MQ=255) gCGTTTTACTTAGCCCTGAAGCGTGATTTTTTTACATTTTAAGa                       >  1:1958702/1‑44 (MQ=255) gCGTTTTACTTAGCCCTGAAGCGTGATTTTTTTACATTTTAAGAACAGGATGACCGCTAATCGt   >  1:906057/1‑64 (MQ=255) gCGTTTTACTTAGCCCTGAAGCGTGATTTTTTTACATTTTAAGAACAGGATGACCGCTAATCGt   >  1:1099439/1‑64 (MQ=255) gCGTTTTACTTAGCCCTGAAGCGTGATTTTTTTACATTTTAAGAACAGGATGACCGCTAATCGTc  >  1:2086165/1‑65 (MQ=255) gCGTTTTACTTAGCCCTGAAGCGTGATTTTTTTACATTTTAAGAACAGGATGACCGCTAATCGTc  >  1:2063936/1‑65 (MQ=255) gCGTTTTACTTAGCCCTGAAGCGTGATTTTTTTACATTTTAAGAACAGGATGACCGCTAATCGTc  >  1:2248442/1‑65 (MQ=255) gCGTTTTACTTAGCCCTGAAGCGTGATTTTTTTACATTTTAAGAACAGGATGACCGCTAATCGTc  >  1:2294876/1‑65 (MQ=255) gCGTTTTACTTAGCCCTGAAGCGTGATTTTTTTACATTTTAAGAACAGGATGACCGCTAATCGTc  >  1:236120/1‑65 (MQ=255) gCGTTTTACTTAGCCCTGAAGCGTGATTTTTTTACATTTTAAGAACAGGATGACCGCTAATCGTc  >  1:2403146/1‑65 (MQ=255) gCGTTTTACTTAGCCCTGAAGCGTGATTTTTTTACATTTTAAGAACAGGATGACCGCTAATCGTc  >  1:2535669/1‑65 (MQ=255) gCGTTTTACTTAGCCCTGAAGCGTGATTTTTTTACATTTTAAGAACAGGATGACCGCTAATCGTc  >  1:3878/1‑65 (MQ=255) gCGTTTTACTTAGCCCTGAAGCGTGATTTTTTTACATTTTAAGAACAGGATGACCGCTAATCGTc  >  1:422752/1‑65 (MQ=255) gCGTTTTACTTAGCCCTGAAGCGTGATTTTTTTACATTTTAAGAACAGGATGACCGCTAATCGTc  >  1:439102/1‑65 (MQ=255) gCGTTTTACTTAGCCCTGAAGCGTGATTTTTTTACATTTTAAGAACAGGATGACCGCTAATCGTc  >  1:55681/1‑65 (MQ=255) gCGTTTTACTTAGCCCTGAAGCGTGATTTTTTTACATTTTAAGAACAGGATGACCGCTAATCGTc  >  1:884529/1‑65 (MQ=255) gCGTTTTACTTAGCCCTGAAGCGTGATTTTTTTACATTTTAAGAACAGGATGACCGCTAATCGTc  >  1:890153/1‑65 (MQ=255) gCGTTTTACTTAGCCCTGAAGCGTGATTTTTTTACATTTTAAGAACAGGATGACCGCTAATCGTc  >  1:2084618/1‑65 (MQ=255) gCGTTTTACTTAGCCCTGAAGCGTGATTTTTTTACATTTTAAGAACAGGATGACCGCTAATCGTc  >  1:1088668/1‑65 (MQ=255) gCGTTTTACTTAGCCCTGAAGCGTGATTTTTTTACATTTTAAGAACAGGATGACCGCTAATCGTc  >  1:1840795/1‑65 (MQ=255) gCGTTTTACTTAGCCCTGAAGCGTGATTTTTTTACATTTTAAGAACAGGATGACCGCTAATCGTc  >  1:1780568/1‑65 (MQ=255) gCGTTTTACTTAGCCCTGAAGCGTGATTTTTTTACATTTTAAGAACAGGATGACCGCTAATCGTc  >  1:1731536/1‑65 (MQ=255) gCGTTTTACTTAGCCCTGAAGCGTGATTTTTTTACATTTTAAGAACAGGATGACCGCTAATCGTc  >  1:1657801/1‑65 (MQ=255) gCGTTTTACTTAGCCCTGAAGCGTGATTTTTTTACATTTTAAGAACAGGATGACCGCTAATCGTc  >  1:1520508/1‑65 (MQ=255) gCGTTTTACTTAGCCCTGAAGCGTGATTTTTTTACATTTTAAGAACAGGATGACCGCTAATCGTc  >  1:1296748/1‑65 (MQ=255) gCGTTTTACTTAGCCCTGAAGCGTGATTTTTTTACATTTTAAGAACAGGATGACCGCTAATCGTc  >  1:1195432/1‑65 (MQ=255) gCGTTTTACTTAGCCCTGAAGCGTGATTTTTTTACATTTTAAGAACAGGATGACCGCTAATCGTc  >  1:118554/1‑65 (MQ=255) gCGTTTTACTTAGCCCTGAAGCGTGATTTTTTTACATTTTAAGAACAGGATGACCGCTAATCGTc  >  1:1107169/1‑65 (MQ=255) gCGTTTTACTTAGCCCTGAAGCGTGATTTTTTTACATTTTAAGAACAGGATGACCGCTAATCGTc  >  1:1102726/1‑65 (MQ=255) gCGTTTTACTTAGCCCTGAAGCGTGATTTTTTTACATTTTAAGAACAGGATGACCGCTAATCCTc  >  1:66083/1‑65 (MQ=255) gCGTTTTACTTAGCCCTGAAGCGTGATTTTTTTACATTCTAAGAACAGGATGACCGCTAATCGTc  >  1:2063526/1‑65 (MQ=255) gCGTTTTACTTAGCCCTGAAGAGTGATTTTTTTACATTATAAGAACAGGAt                >  1:1099040/1‑51 (MQ=255) |                                                                 GCGTTTTACTTAGCCCTGAAGCGTGATTTTTTTACATTTTAAGAACAGGATGACCGCTAATCGTC  >  W3110S.gb/1243712‑1243776

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑