Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	1414411	1414428	18	24 [0]	[0] 28	intR	integrase

AAACGCAACAGCGAACAGAGCAGGGCGATATAGTTATCAACTGTGCGCACGGTTCTTCCTTTTTT  >  W3110S.gb/1414429‑1414493 |                                                                 aaaCGCAACAGCGAACAGAGCAGGGCGATATGGTTATCAACTGTGCGCACGGTTCTTCCtttttt  >  1:2269775/1‑65 (MQ=255) aaaCGCAACAGCGAACAGAGCAGGGCGATATAGTTATCAACTGTGCGCACGGttctt          >  1:1192100/1‑57 (MQ=255) aaaCGCAACAGCGAACAGAGCAGGGCGATATAGTTATCAACTGTGCGCACGGttctt          >  1:450811/1‑57 (MQ=255) aaaCGCAACAGCGAACAGAGCAGGGCGATATAGTTATCAACTGTGCGCACGGTTCTTCCtttttt  >  1:2181167/1‑65 (MQ=255) aaaCGCAACAGCGAACAGAGCAGGGCGATATAGTTATCAACTGTGCGCACGGTTCTTCCtttttt  >  1:958799/1‑65 (MQ=255) aaaCGCAACAGCGAACAGAGCAGGGCGATATAGTTATCAACTGTGCGCACGGTTCTTCCtttttt  >  1:853746/1‑65 (MQ=255) aaaCGCAACAGCGAACAGAGCAGGGCGATATAGTTATCAACTGTGCGCACGGTTCTTCCtttttt  >  1:671680/1‑65 (MQ=255) aaaCGCAACAGCGAACAGAGCAGGGCGATATAGTTATCAACTGTGCGCACGGTTCTTCCtttttt  >  1:570650/1‑65 (MQ=255) aaaCGCAACAGCGAACAGAGCAGGGCGATATAGTTATCAACTGTGCGCACGGTTCTTCCtttttt  >  1:399995/1‑65 (MQ=255) aaaCGCAACAGCGAACAGAGCAGGGCGATATAGTTATCAACTGTGCGCACGGTTCTTCCtttttt  >  1:300521/1‑65 (MQ=255) aaaCGCAACAGCGAACAGAGCAGGGCGATATAGTTATCAACTGTGCGCACGGTTCTTCCtttttt  >  1:2429292/1‑65 (MQ=255) aaaCGCAACAGCGAACAGAGCAGGGCGATATAGTTATCAACTGTGCGCACGGTTCTTCCtttttt  >  1:2296304/1‑65 (MQ=255) aaaCGCAACAGCGAACAGAGCAGGGCGATATAGTTATCAACTGTGCGCACGGTTCTTCCtttttt  >  1:2258261/1‑65 (MQ=255) aaaCGCAACAGCGAACAGAGCAGGGCGATATAGTTATCAACTGTGCGCACGGTTCTTCCtttttt  >  1:2209108/1‑65 (MQ=255) aaaCGCAACAGCGAACAGAGCAGGGCGATATAGTTATCAACTGTGCGCACGGTTCTTCCtttttt  >  1:1047584/1‑65 (MQ=255) aaaCGCAACAGCGAACAGAGCAGGGCGATATAGTTATCAACTGTGCGCACGGTTCTTCCtttttt  >  1:1947541/1‑65 (MQ=255) aaaCGCAACAGCGAACAGAGCAGGGCGATATAGTTATCAACTGTGCGCACGGTTCTTCCtttttt  >  1:1872387/1‑65 (MQ=255) aaaCGCAACAGCGAACAGAGCAGGGCGATATAGTTATCAACTGTGCGCACGGTTCTTCCtttttt  >  1:1809499/1‑65 (MQ=255) aaaCGCAACAGCGAACAGAGCAGGGCGATATAGTTATCAACTGTGCGCACGGTTCTTCCtttttt  >  1:1795309/1‑65 (MQ=255) aaaCGCAACAGCGAACAGAGCAGGGCGATATAGTTATCAACTGTGCGCACGGTTCTTCCtttttt  >  1:1752236/1‑65 (MQ=255) aaaCGCAACAGCGAACAGAGCAGGGCGATATAGTTATCAACTGTGCGCACGGTTCTTCCtttttt  >  1:1560135/1‑65 (MQ=255) aaaCGCAACAGCGAACAGAGCAGGGCGATATAGTTATCAACTGTGCGCACGGTTCTTCCtttttt  >  1:1304162/1‑65 (MQ=255) aaaCGCAACAGCGAACAGAGCAGGGCGATATAGTTATCAACTGTGCGCACGGTTCTTCCtttttt  >  1:1269439/1‑65 (MQ=255) aaaCGCAACAGCGAACAGAGCAGGGCGATATAGTTATCAACTGTGCGCACGGTTCTTCCtttttt  >  1:1230407/1‑65 (MQ=255) aaaCGCAACAGCGAACAGAGCAGGGCGATATAGTTATCAACTGTGCGCACGGTTCTTCCtttttt  >  1:1227489/1‑65 (MQ=255) aaaCGCAACAGCGAACAGAGCAGGGCGATATAGTTATCAACTGTGCGCACGGTTCTTCCtttttt  >  1:1216182/1‑65 (MQ=255) aaaCGCAACAGCGAACAGAGCAGGGCGATATAGTTATCAACTGTGCGCACGGTTCTTCCtttttt  >  1:1049963/1‑65 (MQ=255) aaaCGCAACAGCGAACAGAGCAGGGCGATATAGTTATCAACTGTGCGCACGGTTCTTCCttttt   >  1:773525/1‑64 (MQ=255) |                                                                 AAACGCAACAGCGAACAGAGCAGGGCGATATAGTTATCAACTGTGCGCACGGTTCTTCCTTTTTT  >  W3110S.gb/1414429‑1414493

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑