Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	2002243	2002254	12	4 [0]	[0] 26	fliY	cystine transporter subunit

CCCATTTGGTCGGTTTTAGTGACGCCTCAACGCCAAGATGTTTTGCCAGCTGTTGGGCAAATTCC  >  W3110S.gb/2002255‑2002319 |                                                                 cccATTTGTTCGGTTTTAGTGACGCCTCAACGCCAACATGTTTTGcc                    >  1:998906/1‑47 (MQ=255) cccATTTGGTCGGTTTTAGTGACGCCTCAACGCCAAGATg                           >  1:298361/1‑40 (MQ=255) cccATTTGGTCGGTTTTAGTGACGCCTCAACGCCAAGATGtt                         >  1:837852/1‑42 (MQ=255) cccATTTGGTCGGTTTTAGTGACGCCTCAACGCCAAGATGTTTTGcc                    >  1:415214/1‑47 (MQ=255) cccATTTGGTCGGTTTTAGTGACGCCTCAACGCCAAGATGTTTTGcc                    >  1:1068515/1‑47 (MQ=255) cccATTTGGTCGGTTTTAGTGACGCCTCAACGCCAAGATGTTTTGcc                    >  1:244198/1‑47 (MQ=255) cccATTTGGTCGGTTTTAGTGACGCCTCAACGCCAAGATGTTTTGcc                    >  1:2320366/1‑47 (MQ=255) cccATTTGGTCGGTTTTAGTGACGCCTCAACGCCAAGATGTTTTGcc                    >  1:521869/1‑47 (MQ=255) cccATTTGGTCGGTTTTAGTGACGCCTCAACGCCAAGATGTTTTGcc                    >  1:194372/1‑47 (MQ=255) cccATTTGGTCGGTTTTAGTGACGCCTCAACGCCAAGATGTTTTGcc                    >  1:64904/1‑47 (MQ=255) cccATTTGGTCGGTTTTAGTGACGCCTCAACGCCAAGATGTTTTGcc                    >  1:679525/1‑47 (MQ=255) cccATTTGGTCGGTTTTAGTGACGCCTCAACGCCAAGATGTTTTGcc                    >  1:1448743/1‑47 (MQ=255) cccATTTGGTCGGTTTTAGTGACGCCTCAACGCCAAGATGTTTTGcc                    >  1:982477/1‑47 (MQ=255) cccATTTGGTCGGTTTTAGTGACGCCTCAACGCCAAGATGTTTTGCCAGCTGTTGGGCAAATTcc  >  1:63959/1‑65 (MQ=255) cccATTTGGTCGGTTTTAGTGACGCCTCAACGCCAAGATGTTTTGCCAGCTGTTGGGCAAATTcc  >  1:964919/1‑65 (MQ=255) cccATTTGGTCGGTTTTAGTGACGCCTCAACGCCAAGATGTTTTGCCAGCTGTTGGGCAAATTcc  >  1:437683/1‑65 (MQ=255) cccATTTGGTCGGTTTTAGTGACGCCTCAACGCCAAGATGTTTTGCCAGCTGTTGGGCAAATTcc  >  1:2474551/1‑65 (MQ=255) cccATTTGGTCGGTTTTAGTGACGCCTCAACGCCAAGATGTTTTGCCAGCTGTTGGGCAAATTcc  >  1:413984/1‑65 (MQ=255) cccATTTGGTCGGTTTTAGTGACGCCTCAACGCCAAGATGTTTTGCCAGCTGTTGGGCAAATTcc  >  1:2253334/1‑65 (MQ=255) cccATTTGGTCGGTTTTAGTGACGCCTCAACGCCAAGATGTTTTGCCAGCTGTTGGGCAAATTcc  >  1:1803068/1‑65 (MQ=255) cccATTTGGTCGGTTTTAGTGACGCCTCAACGCCAAGATGTTTTGCCAGCTGTTGGGCAAATTcc  >  1:1564391/1‑65 (MQ=255) cccATTTGGTCGGTTTTAGTGACGCCTCAACGCCAAGATGTTTTGCCAGCTGTTGGGCAAATTcc  >  1:1449495/1‑65 (MQ=255) cccATTTGGTCGGTTTTAGTGACGCCTCAACGCCAAGATGTTTTGCCAGCTGTTGGGCAAATTcc  >  1:1446537/1‑65 (MQ=255) cccATTTGGTCGGTTTTAGTGACGCCTCAACGCCAAGATGTTTTGCCAGCTGTTGGGCAAATTcc  >  1:1278389/1‑65 (MQ=255) cccATTTGGTCGGTTTTAGTGACGCCTCAACGCCAAGATGTTTTGCCAGCTGTTGGGCAAATTcc  >  1:1269597/1‑65 (MQ=255) cccATTTGGTCGGTTTTAGTGACGCCTCAACGCCAAGATGTTTTGCCAGCTGTTGGGCAAATTcc  >  1:1150087/1‑65 (MQ=255) |                                                                 CCCATTTGGTCGGTTTTAGTGACGCCTCAACGCCAAGATGTTTTGCCAGCTGTTGGGCAAATTCC  >  W3110S.gb/2002255‑2002319

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑