Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	2003738	2003748	11	18 [0]	[0] 21	fliA	RNA polymerase, sigma 28 (sigma F) factor

CATAGCGTTCGACGGCATTAAGTAACCCAATGCCGCCCGCCTGTAGCAGATCGTCAAGTTCCACG  >  W3110S.gb/2003749‑2003813 |                                                                 cATAGCGTTCGCCGGCATTAAGTAACCCAATGCCGCCCGCCTGTAGCAGATCGTCAAGTTCCACg  >  1:574797/1‑65 (MQ=255) cATAGCGTTCGACGGCATTAAGTAACCCAATGCCGCCCGCCTGTAGCAGATCGTCAAGTTcc     >  1:2053544/1‑62 (MQ=255) cATAGCGTTCGACGGCATTAAGTAACCCAATGCCGCCCGCCTGTAGCAGATCGTCAAGTTCCACg  >  1:2315414/1‑65 (MQ=255) cATAGCGTTCGACGGCATTAAGTAACCCAATGCCGCCCGCCTGTAGCAGATCGTCAAGTTCCACg  >  1:988385/1‑65 (MQ=255) cATAGCGTTCGACGGCATTAAGTAACCCAATGCCGCCCGCCTGTAGCAGATCGTCAAGTTCCACg  >  1:89653/1‑65 (MQ=255) cATAGCGTTCGACGGCATTAAGTAACCCAATGCCGCCCGCCTGTAGCAGATCGTCAAGTTCCACg  >  1:66678/1‑65 (MQ=255) cATAGCGTTCGACGGCATTAAGTAACCCAATGCCGCCCGCCTGTAGCAGATCGTCAAGTTCCACg  >  1:573774/1‑65 (MQ=255) cATAGCGTTCGACGGCATTAAGTAACCCAATGCCGCCCGCCTGTAGCAGATCGTCAAGTTCCACg  >  1:560278/1‑65 (MQ=255) cATAGCGTTCGACGGCATTAAGTAACCCAATGCCGCCCGCCTGTAGCAGATCGTCAAGTTCCACg  >  1:505788/1‑65 (MQ=255) cATAGCGTTCGACGGCATTAAGTAACCCAATGCCGCCCGCCTGTAGCAGATCGTCAAGTTCCACg  >  1:451172/1‑65 (MQ=255) cATAGCGTTCGACGGCATTAAGTAACCCAATGCCGCCCGCCTGTAGCAGATCGTCAAGTTCCACg  >  1:383009/1‑65 (MQ=255) cATAGCGTTCGACGGCATTAAGTAACCCAATGCCGCCCGCCTGTAGCAGATCGTCAAGTTCCACg  >  1:2525871/1‑65 (MQ=255) cATAGCGTTCGACGGCATTAAGTAACCCAATGCCGCCCGCCTGTAGCAGATCGTCAAGTTCCACg  >  1:1016027/1‑65 (MQ=255) cATAGCGTTCGACGGCATTAAGTAACCCAATGCCGCCCGCCTGTAGCAGATCGTCAAGTTCCACg  >  1:2278517/1‑65 (MQ=255) cATAGCGTTCGACGGCATTAAGTAACCCAATGCCGCCCGCCTGTAGCAGATCGTCAAGTTCCACg  >  1:2132132/1‑65 (MQ=255) cATAGCGTTCGACGGCATTAAGTAACCCAATGCCGCCCGCCTGTAGCAGATCGTCAAGTTCCACg  >  1:2121471/1‑65 (MQ=255) cATAGCGTTCGACGGCATTAAGTAACCCAATGCCGCCCGCCTGTAGCAGATCGTCAAGTTCCACg  >  1:1829435/1‑65 (MQ=255) cATAGCGTTCGACGGCATTAAGTAACCCAATGCCGCCCGCCTGTAGCAGATCGTCAAGTTCCACg  >  1:1822151/1‑65 (MQ=255) cATAGCGTTCGACGGCATTAAGTAACCCAATGCCGCCCGCCTGTAGCAGATCGTCAAGTTCCACg  >  1:156658/1‑65 (MQ=255) cATAGCGTTCGACGGCATTAAGTAACCCAATGCCGCCCGCCTGTAGCAGATCGTCAAGTTCCACg  >  1:1106850/1‑65 (MQ=255) cATAGCGTTCGACGGCATTAAGTAACCCAATGCCGCCAGCCTGTAGCAGATCGTCAAg         >  1:2149436/1‑58 (MQ=255) |                                                                 CATAGCGTTCGACGGCATTAAGTAACCCAATGCCGCCCGCCTGTAGCAGATCGTCAAGTTCCACG  >  W3110S.gb/2003749‑2003813

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑