Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	2022672	2022672	1	5 [0]	[0] 31	fliM	flagellar motor switching and energizing component

ACAGCGCGTCATCAACCGCATGTTGAAACTGGCGCTTGAAGGCTATAGCGACGCCTGGAAGGCG  >  W3110S.gb/2022673‑2022736 |                                                                aCAGCGCGTCATCAACCGGATGTTGAAACTGGCGCTTGAAAGCTATAGCGACGCCTGGAAGGCg  >  1:2311152/1‑64 (MQ=255) aCAGCGCGTCATCAACCGCATGTTGAAACTGGCGCTTGAAGGCt                      >  1:2342070/1‑44 (MQ=255) aCAGCGCGTCATCAACCGCATGTTGAAACTGGCGCTTGAAGGCTATAGCGACGCCTGGAAGGc   >  1:2337965/1‑63 (MQ=255) aCAGCGCGTCATCAACCGCATGTTGAAACTGGCGCTTGAAGGCTATAGCGACGCCTGGAAGGCg  >  1:2196316/1‑64 (MQ=255) aCAGCGCGTCATCAACCGCATGTTGAAACTGGCGCTTGAAGGCTATAGCGACGCCTGGAAGGCg  >  1:92782/1‑64 (MQ=255) aCAGCGCGTCATCAACCGCATGTTGAAACTGGCGCTTGAAGGCTATAGCGACGCCTGGAAGGCg  >  1:907574/1‑64 (MQ=255) aCAGCGCGTCATCAACCGCATGTTGAAACTGGCGCTTGAAGGCTATAGCGACGCCTGGAAGGCg  >  1:858458/1‑64 (MQ=255) aCAGCGCGTCATCAACCGCATGTTGAAACTGGCGCTTGAAGGCTATAGCGACGCCTGGAAGGCg  >  1:718527/1‑64 (MQ=255) aCAGCGCGTCATCAACCGCATGTTGAAACTGGCGCTTGAAGGCTATAGCGACGCCTGGAAGGCg  >  1:663852/1‑64 (MQ=255) aCAGCGCGTCATCAACCGCATGTTGAAACTGGCGCTTGAAGGCTATAGCGACGCCTGGAAGGCg  >  1:411019/1‑64 (MQ=255) aCAGCGCGTCATCAACCGCATGTTGAAACTGGCGCTTGAAGGCTATAGCGACGCCTGGAAGGCg  >  1:375958/1‑64 (MQ=255) aCAGCGCGTCATCAACCGCATGTTGAAACTGGCGCTTGAAGGCTATAGCGACGCCTGGAAGGCg  >  1:32469/1‑64 (MQ=255) aCAGCGCGTCATCAACCGCATGTTGAAACTGGCGCTTGAAGGCTATAGCGACGCCTGGAAGGCg  >  1:293235/1‑64 (MQ=255) aCAGCGCGTCATCAACCGCATGTTGAAACTGGCGCTTGAAGGCTATAGCGACGCCTGGAAGGCg  >  1:267139/1‑64 (MQ=255) aCAGCGCGTCATCAACCGCATGTTGAAACTGGCGCTTGAAGGCTATAGCGACGCCTGGAAGGCg  >  1:2346169/1‑64 (MQ=255) aCAGCGCGTCATCAACCGCATGTTGAAACTGGCGCTTGAAGGCTATAGCGACGCCTGGAAGGCg  >  1:2240640/1‑64 (MQ=255) aCAGCGCGTCATCAACCGCATGTTGAAACTGGCGCTTGAAGGCTATAGCGACGCCTGGAAGGCg  >  1:1257586/1‑64 (MQ=255) aCAGCGCGTCATCAACCGCATGTTGAAACTGGCGCTTGAAGGCTATAGCGACGCCTGGAAGGCg  >  1:2148257/1‑64 (MQ=255) aCAGCGCGTCATCAACCGCATGTTGAAACTGGCGCTTGAAGGCTATAGCGACGCCTGGAAGGCg  >  1:2031618/1‑64 (MQ=255) aCAGCGCGTCATCAACCGCATGTTGAAACTGGCGCTTGAAGGCTATAGCGACGCCTGGAAGGCg  >  1:1936432/1‑64 (MQ=255) aCAGCGCGTCATCAACCGCATGTTGAAACTGGCGCTTGAAGGCTATAGCGACGCCTGGAAGGCg  >  1:1783689/1‑64 (MQ=255) aCAGCGCGTCATCAACCGCATGTTGAAACTGGCGCTTGAAGGCTATAGCGACGCCTGGAAGGCg  >  1:1767932/1‑64 (MQ=255) aCAGCGCGTCATCAACCGCATGTTGAAACTGGCGCTTGAAGGCTATAGCGACGCCTGGAAGGCg  >  1:1521060/1‑64 (MQ=255) aCAGCGCGTCATCAACCGCATGTTGAAACTGGCGCTTGAAGGCTATAGCGACGCCTGGAAGGCg  >  1:1487157/1‑64 (MQ=255) aCAGCGCGTCATCAACCGCATGTTGAAACTGGCGCTTGAAGGCTATAGCGACGCCTGGAAGGCg  >  1:1472948/1‑64 (MQ=255) aCAGCGCGTCATCAACCGCATGTTGAAACTGGCGCTTGAAGGCTATAGCGACGCCTGGAAGGCg  >  1:136026/1‑64 (MQ=255) aCAGCGCGTCATCAACCGCATGTTGAAACTGGCGCTTGAAGGCTATAGCGACGCCTGGAAGGCg  >  1:129834/1‑64 (MQ=255) aCAGCGCGTCATCAACCGCATGTTGAAACTGGCGCTTGAAGGCTATAGCGACGCCTGGAAGGCg  >  1:1277276/1‑64 (MQ=255) aCAGCGCGTCATCAACCGCATGTTGAAACTGGCGCTTGAAGGCTATAGCGACGCCTGGAAGGCg  >  1:1276686/1‑64 (MQ=255) aCAGCGCGTCATCAACCGCATGTTGAAACTGGCGCTTGAAGGCTATAGCGACGCCTGGAAGGCg  >  1:1274459/1‑64 (MQ=255) aCAGCGCGTCATCAACCGCATGTTGAAACTGGCGCTTGAAGGCTATAGCGACGCCTGGAAGGCg  >  1:126846/1‑64 (MQ=255) |                                                                ACAGCGCGTCATCAACCGCATGTTGAAACTGGCGCTTGAAGGCTATAGCGACGCCTGGAAGGCG  >  W3110S.gb/2022673‑2022736

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑