Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	2074428	2074452	25	7 [0]	[1] 37	flu	antigen 43 (Ag43) phase‑variable biofilm formation autotransporter

GGGGATACCAGTATGTGCACAACGGCGGTACAGCGTCTGACACTGTTGTGAACAGTGACGGCTGGCAGATTGTCAAAAACGG  >  W3110S.gb/2074436‑2074517                  |                                                                 ggggATACCAGTATGTGCACAACGGCGGTACAGCGt                                                <  1:836095/36‑1 (MQ=255)                  cacaACGGCGGTACAGCTTCTGACACTGTTGTGAACAGTGACGGCTGGCAGATTGTCAAAAACg   <  1:961172/64‑1 (MQ=255)                  cacaACGGCGGTACAGCGTCTGACACTGTTGTGAACAGTGACGGCTGGCAGATTGTCAAAAACgg  >  1:1037036/1‑65 (MQ=255)                  cacaACGGCGGTACAGCGTCTGACACTGTTGTGAACAGTGACGGCTGGCAGATTGTCAAAAACgg  >  1:980302/1‑65 (MQ=255)                  cacaACGGCGGTACAGCGTCTGACACTGTTGTGAACAGTGACGGCTGGCAGATTGTCAAAAACgg  >  1:777869/1‑65 (MQ=255)                  cacaACGGCGGTACAGCGTCTGACACTGTTGTGAACAGTGACGGCTGGCAGATTGTCAAAAACgg  >  1:761472/1‑65 (MQ=255)                  cacaACGGCGGTACAGCGTCTGACACTGTTGTGAACAGTGACGGCTGGCAGATTGTCAAAAACgg  >  1:71728/1‑65 (MQ=255)                  cacaACGGCGGTACAGCGTCTGACACTGTTGTGAACAGTGACGGCTGGCAGATTGTCAAAAACgg  >  1:7074/1‑65 (MQ=255)                  cacaACGGCGGTACAGCGTCTGACACTGTTGTGAACAGTGACGGCTGGCAGATTGTCAAAAACgg  >  1:670253/1‑65 (MQ=255)                  cacaACGGCGGTACAGCGTCTGACACTGTTGTGAACAGTGACGGCTGGCAGATTGTCAAAAACgg  >  1:615731/1‑65 (MQ=255)                  cacaACGGCGGTACAGCGTCTGACACTGTTGTGAACAGTGACGGCTGGCAGATTGTCAAAAACgg  >  1:368615/1‑65 (MQ=255)                  cacaACGGCGGTACAGCGTCTGACACTGTTGTGAACAGTGACGGCTGGCAGATTGTCAAAAACgg  >  1:311513/1‑65 (MQ=255)                  cacaACGGCGGTACAGCGTCTGACACTGTTGTGAACAGTGACGGCTGGCAGATTGTCAAAAACgg  >  1:2518677/1‑65 (MQ=255)                  cacaACGGCGGTACAGCGTCTGACACTGTTGTGAACAGTGACGGCTGGCAGATTGTCAAAAACgg  >  1:2420622/1‑65 (MQ=255)                  cacaACGGCGGTACAGCGTCTGACACTGTTGTGAACAGTGACGGCTGGCAGATTGTCAAAAACgg  >  1:2331048/1‑65 (MQ=255)                  cacaACGGCGGTACAGCGTCTGACACTGTTGTGAACAGTGACGGCTGGCAGATTGTCAAAAACgg  >  1:2009539/1‑65 (MQ=255)                  cacaACGGCGGTACAGCGTCTGACACTGTTGTGAACAGTGACGGCTGGCAGATTGTCAAAAACgg  >  1:1028592/1‑65 (MQ=255)                  cacaACGGCGGTACAGCGTCTGACACTGTTGTGAACAGTGACGGCTGGCAGATTGTCAAAAACgg  >  1:1248729/1‑65 (MQ=255)                  cacaACGGCGGTACAGCGTCTGACACTGTTGTGAACAGTGACGGCTGGCAGATTGTCAAAAACgg  >  1:185408/1‑65 (MQ=255)                  cacaACGGCGGTACAGCGTCTGACACTGTTGTGAACAGTGACGGCTGGCAGATTGTCAAAAACgg  >  1:1319305/1‑65 (MQ=255)                  cacaACGGCGGTACAGCGTCTGACACTGTTGTGAACAGTGACGGCTGGCAGATTGTCAAAAACgg  >  1:1371206/1‑65 (MQ=255)                  cacaACGGCGGTACAGCGTCTGACACTGTTGTGAACAGTGACGGCTGGCAGATTGTCAAAAACgg  >  1:1653418/1‑65 (MQ=255)                  cacaACGGCGGTACAGCGTCTGACACTGTTGTGAACAGTGACGGCTGGCAGATTGTCAAAAACgg  >  1:1627458/1‑65 (MQ=255)                  cacaACGGCGGTACAGCGTCTGACACTGTTGTGAACAGTGACGGCTGGCAGATTGTCAAAAACgg  >  1:159139/1‑65 (MQ=255)                  cacaACGGCGGTACAGCGTCTGACACTGTTGTGAACAGTGACGGCTGGCAGATTGTCAAAAACgg  >  1:1424888/1‑65 (MQ=255)                  cacaACGGCGGTACAGCGTCTGACACTGTTGTGAACAGTGACGGCTGGCAGATTGTCAAAAACg   >  1:434661/1‑64 (MQ=255)                  cacaACGGCGGTACAGCGTCTGACACTGTTGTGAACAGTGACGGCTGGCAGATTGTCAAAAACg   <  1:138015/64‑1 (MQ=255)                  cacaACGGCGGTACAGCGTCTGACACTGTTGTGAACAGTGACGGCTGGCAGATTGTCAAAAACg   <  1:1395715/64‑1 (MQ=255)                  cacaACGGCGGTACAGCGTCTGACACTGTTGTGAACAGTGACGGCTGGCAGATTGTCAAAAACg   <  1:1587319/64‑1 (MQ=255)                  cacaACGGCGGTACAGCGTCTGACACTGTTGTGAACAGTGACGGCTGGCAGATTGTCAAAAACg   <  1:592879/64‑1 (MQ=255)                  cacaACGGCGGTACAGCGTCTGACACTGTTGTGAACAGTGACGGCTGGCAGATTGTCAAAAACg   <  1:250819/64‑1 (MQ=255)                  cacaACGGCGGTACAGCGTCTGACACTGTTGTGAACAGTGACGGCTGGCAGATTGTCAAAAACg   <  1:1828190/64‑1 (MQ=255)                  cacaACGGCGGTACAGCGTCTGACACTGTTGTGAACAGTGACGGCTGGCAGATTGTCAAAAACg   <  1:2347794/64‑1 (MQ=255)                  cacaACGGCGGTACAGCGTCTGACACTGTTGTGAACAGTGACGGCTGGCAGATTGTCAAAAACg   <  1:2022537/64‑1 (MQ=255)                  cacaACGGCGGTACAGCGTCTGACACTGTTGTGAACAGTGACGGCTGGCAGATTGTCAAAAACg   <  1:1858615/64‑1 (MQ=255)                  cacaACGGCGGTACAGCGTCTGACACTGATGTGAACAGTGACGGCTGGCa                 >  1:1065588/1‑50 (MQ=255)                  cacaACGGCGGCACAGCGTCTGACACTGTTGTGAACAGTGACGGCTGGCAGATTGTCAAAAACg   <  1:1930284/64‑1 (MQ=255)                  |                                                                 GGGGATACCAGTATGTGCACAACGGCGGTACAGCGTCTGACACTGTTGTGAACAGTGACGGCTGGCAGATTGTCAAAAACGG  >  W3110S.gb/2074436‑2074517

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑