| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 566000 = | NA (NA) | 30 (0.560) | 7/126 | 0.7 | 66.7% | intergenic (+90/‑56) | ybcD/insE | DLP12 prophage region; ECK0532:JW0527:b4508; predicted replication protein fragment/IS3 element protein InsE |
| ? | W3110S.gb | = 576913 | 15 (0.280) | coding (78/498 nt) | ybcS | predicted lysozyme | |||||
CCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/566056‑566000‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AGTGATTAACACTGATGCTATAGCAATTGCTCCGCCAC < W3110S.gb/576913‑576876 CCTCTGACTGAGTGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAAGTGATTAACACT < 1:1519039/70‑1CCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAAGTGATTAACACT < 1:3776939/70‑1CCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAAGTGATTAACACT < 1:3247958/70‑1 TCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAAGTGATTAACACTGA > 1:3056464/1‑70 TCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAAGTGATTAACACTGA > 1:903527/1‑70 TCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAAGTGATTAACACTGA > 1:721266/1‑70 TCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAAGTGATTAACACTGA > 1:437034/1‑70 TCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAAGTGATTAACACTGA > 1:4024919/1‑70 TCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAAGTGATTAACACTGA > 1:3892402/1‑70 TCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAAGTGATTAACACTGA > 1:3590958/1‑70 TCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAAGTGATTAACACTGA > 1:2214863/1‑70 TCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAAGTGATTAACACTGA > 1:1840132/1‑70 TACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAAGTGATTAACACTGATGCTATAGCAATTG < 1:3089181/70‑1 TAGCCGCGTGTCCACTATTGCTGGGTAAGATCAAGTGATTAACACTGATGCTATAGCAATTGCTCCGCCAC > 1:2113642/1‑71 TAGCCGCGTGTCCACTATTGCTGGGTAAGATCAAGTGATTAACACTGATGCTATAGCAATTGCTCCGCCAC > 1:2818321/1‑71 TAGCCGCGTGTCCACTATTGCTGGGTAAGATCAAGTGATTAACACTGATGCTATAGCAATTGCTCCGCCAC > 1:631045/1‑71 TAGCCGCGTGTCCACTATTGCTGGGTAAGATCAAGTGATTAACACTGATGCTATAGCAATTGCTCCGCCAC > 1:3279712/1‑71 TAGCCGCGTGTCCACTATTGCTGGGTAAGATCAAGTGATTAACACTGATGCTATAGCAATTGCTCCGCCAC > 1:1822546/1‑71 TAGCCGCGTGTCCACTATTGCTGGGTAAGATCAAGTGATTAACACTGATGCTATAGCAATTGCTCCGCCAC > 1:1478466/1‑71 TAGCCGCGTGTCCACTATTGCTGGGTAAGATCAAGTGATTAACACTGATGCTATAGCAATTGCTCCGCCAC > 1:626184/1‑71 AGCCGCGTGTCCACTATTGCTGGGTAAGATCAAGTGATTAACACTGATGCTATAGCAATTGCTCCGCCAC > 1:1229287/1‑70 AGCCGCGTGTCCACTATTGCTGGGTAAGATCAAGTGATTAACACTGATGCTATAGCAATTGCTCCGCCAC > 1:2030510/1‑70 AGCCGCGTGTCCACTATTGCTGGGTAAGATCAAGTGATTAACACTGATGCTATAGCAATTGCTCCGCCAC > 1:1837893/1‑70 AGCCGCGTGTCCACTATTGCTGGGTAAGATCAAGTGATTAACACTGATGCTATAGCAATTGCTCCGCCAC > 1:412071/1‑70 TCCACTATTGCTGGGTAAGATCAAGTGATTAACACTGAT < 1:1115790/39‑1 TCCACTATTGCTGGGTAAGATCAAGTGATTAACACTGAT < 1:1398868/39‑1 TCCACTATTGCTGGGTAAGATCAAGTGATTAACACTGAT < 1:4082783/39‑1 TCCACTATTGCTGGGTAAGATCAAGTGATTAACACTGAT < 1:2616190/39‑1 TCCACTATTGCTGGGTAAGATCAAGTGATTAACACTGAT < 1:2344401/39‑1 ATTGCTGGGTAAGATCAAGTGATTAACACTGATGCTATAGCAATTGCTCCGCCA > 1:1008831/1‑54 CCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/566056‑566000‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AGTGATTAACACTGATGCTATAGCAATTGCTCCGCCAC < W3110S.gb/576913‑576876 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |