| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 2173564 | NA (NA) | 14 (0.270) | 7/124 | 0.6 | 87.7% | pseudogene (307/2041 nt) pseudogene (307/339 nt) |
gatR gatR |
DNA‑binding transcriptional regulator; ECK2083:JW5340+JW2074:b4498 DNA‑binding transcriptional regulator, C‑ter fragment; ECK2083:JW2074:b2090 |
| ? | W3110S.gb | 3920278 = | 2 (0.040) | coding (91/213 nt) | cspA | major cold shock protein | |||||
CTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGGCGCGCTGGCGAGCTG > W3110S.gb/2173497‑2173633 | cTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTTGGTAGGATCAGt < 1:1015606/71‑1 (MQ=17)cTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGt < 1:235708/71‑1 (MQ=32) tCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGt < 1:1118988/70‑1 (MQ=33) tCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGt < 1:2335482/70‑1 (MQ=33) gTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGt < 1:3751163/67‑1 (MQ=33) cGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGAtcattcat < 1:651578/67‑1 (MQ=14) cGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCAt < 1:301429/67‑1 (MQ=37) cGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCAt < 1:2190251/67‑1 (MQ=37) tttGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGAt < 1:2945034/71‑1 (MQ=255) aaaCAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATGAGTCa < 1:1829653/53‑1 (MQ=255) aaaCAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCa < 1:887188/53‑1 (MQ=35) aaaCAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCa < 1:2510310/53‑1 (MQ=35) aaaCAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCa < 1:3078091/53‑1 (MQ=35) aaaCAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCa < 1:1478883/53‑1 (MQ=35) cAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGa > 1:1360858/1‑71 (MQ=255) aCCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATc > 1:3932215/1‑47 (MQ=255) aCCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATc > 1:689335/1‑47 (MQ=255) aCCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATc > 1:2969953/1‑47 (MQ=255) aCCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATc > 1:3998687/1‑47 (MQ=255) aCCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATc > 1:3252880/1‑47 (MQ=255) aCCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATc > 1:2001131/1‑47 (MQ=255) aCCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATc > 1:1194564/1‑47 (MQ=255) aCCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATc > 1:2113850/1‑47 (MQ=255) aCCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATc > 1:2591250/1‑47 (MQ=255) aCCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATc > 1:376512/1‑47 (MQ=255) aCCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATc > 1:1270099/1‑47 (MQ=255) aCCTCGATTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATc > 1:529382/1‑47 (MQ=255) aCCTCGATTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATc > 1:3163/1‑47 (MQ=255) gCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTTGATCAt < 1:3443240/50‑1 (MQ=255) gCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCAt < 1:645329/50‑1 (MQ=255) gCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCAt < 1:3047091/50‑1 (MQ=255) gCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCAt < 1:3224617/50‑1 (MQ=255) gCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCAt < 1:3659474/50‑1 (MQ=255) gCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCAt < 1:2835779/50‑1 (MQ=255) gCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCAt < 1:2739940/50‑1 (MQ=255) gCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCAt < 1:128034/50‑1 (MQ=255) gCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCAt < 1:1375754/50‑1 (MQ=255) gCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCAt < 1:1645421/50‑1 (MQ=255) gCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCAt < 1:1723621/50‑1 (MQ=255) ccTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCAt < 1:1819160/49‑1 (MQ=255) tCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCAtttt > 1:2736069/1‑46 (MQ=255) tCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGttt > 1:782685/1‑71 (MQ=255) ttACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTgg > 1:2056102/1‑70 (MQ=255) ttACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGgc > 1:1190772/1‑71 (MQ=255) ttACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGgc > 1:321964/1‑71 (MQ=255) tACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGgcg > 1:2720295/1‑71 (MQ=255) tACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGgcg > 1:3812227/1‑71 (MQ=255) tACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGgcg > 1:1665076/1‑71 (MQ=255) tACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGgcg > 1:3668558/1‑71 (MQ=255) tACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGgcg > 1:3294031/1‑71 (MQ=255) tACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGgcg > 1:1921302/1‑71 (MQ=255) tACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGgcg > 1:2277337/1‑71 (MQ=255) tACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGgcg > 1:3060785/1‑71 (MQ=255) tACCTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGgcg > 1:2992259/1‑71 (MQ=255) gTGGGTAGGATCAGTCATCCCTTCGTGGATCAtttt < 1:261151/36‑1 (MQ=255) gTGGGTAGGATCAGTCATCCCTTCGTGGATCAtttt < 1:1463585/36‑1 (MQ=255) tGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGGCGCGCt > 1:2704660/1‑71 (MQ=255) tGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGGCGCGCt > 1:2336158/1‑71 (MQ=255) tGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGGCGCGCt > 1:2602286/1‑71 (MQ=255) tGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGGCGCGCt > 1:1589305/1‑71 (MQ=255) tGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGGCGCGCt > 1:568617/1‑71 (MQ=255) ggTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGGCGCGCTgg > 1:3408314/1‑71 (MQ=255) ggTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGGCGCGCTgg > 1:3809856/1‑71 (MQ=255) gTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGGCGCGCTg < 1:3173153/69‑1 (MQ=255) gTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGGCGCGCTg < 1:71568/69‑1 (MQ=255) gTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGGCGCGCTg < 1:2994950/69‑1 (MQ=255) gTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGGCGCGCTg < 1:3944070/69‑1 (MQ=255) gTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGGCGCGCTg < 1:3749760/69‑1 (MQ=255) tAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGGCGCGCTg < 1:2633337/68‑1 (MQ=255) tAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGGCGCGCTg < 1:1024458/68‑1 (MQ=255) aTCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGGCGCGCTg < 1:3132670/64‑1 (MQ=255) cAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGGCGCGCTGGCGAGCTg > 1:172174/1‑70 (MQ=255) | CTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGGCGCGCTGGCGAGCTG > W3110S.gb/2173497‑2173633 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |