New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	W3110S.gb	= 2018583	4 (0.070)	51 (0.980)	8/122	0.5	93.0%	coding (579/687 nt)	fliH	flagellar biosynthesis protein
	?	W3110S.gb	= 2521059	NA (NA)					intergenic (+170/+30)	insL/yfeA	predicted transposase/predicted diguanylate cyclase

GCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATAC  >  W3110S.gb/2521016‑2521125                                            |                                                                   gCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAAATCCCCGGTTTTTTTACGcc                                         >  1:2996338/1‑71 (MQ=255)      gCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTa                                    <  1:1454547/71‑1 (MQ=255)      gCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTa                                    <  1:72601/71‑1 (MQ=255)      gCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTa                                    <  1:4084118/71‑1 (MQ=255)      gCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTa                                    <  1:2241253/71‑1 (MQ=255)      gCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTa                                    <  1:2244144/71‑1 (MQ=255)       cATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTAc                                            <  1:2988794/62‑1 (MQ=255)        aTTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGttt                                                  >  1:4013704/1‑55 (MQ=255)        aTTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAAt                                  >  1:1530628/1‑71 (MQ=255)         ttcttcAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACg                                           >  1:83737/1‑61 (MQ=255)         ttcttcAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACg                                           >  1:1964269/1‑61 (MQ=255)         ttcttcAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGc                                          >  1:3025489/1‑62 (MQ=255)         ttcttcAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGc                                          >  1:1483042/1‑62 (MQ=255)         ttcttcAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATc                                 <  1:658719/71‑1 (MQ=255)                                    aGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCa       <  1:2459539/70‑1 (MQ=255)                                       gcTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATa   <  1:2201417/71‑1 (MQ=255)                                       gcTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATa   <  1:2156219/71‑1 (MQ=255)                                       gcTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATa   <  1:1969478/71‑1 (MQ=255)                                       gcTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATa   <  1:494119/71‑1 (MQ=255)                                       gcTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATa   <  1:606953/71‑1 (MQ=255)                                        cTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATAc  <  1:2527008/71‑1 (MQ=255)                                        cTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATAc  <  1:3171425/71‑1 (MQ=255)                                        cTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATAc  <  1:3415112/71‑1 (MQ=255)                                            |                                                                   GCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATAC  >  W3110S.gb/2521016‑2521125

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.