| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 4547372 | 11 (0.200) | 10 (0.220) | 4/108 | 1.0 | 47.2% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin |
| ? | W3110S.gb | = 4547668 | 13 (0.280) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin | |||||
ACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACA > W3110S.gb/4547599‑4547732 | aCAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAAt < 1:1561873‑M2/71‑2 (MQ=255)aCAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAAt < 1:3353560‑M2/71‑2 (MQ=255)aCAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAAt < 1:3071087‑M2/71‑2 (MQ=255)aCAATAGAATATTAAGC‑AACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAAtg < 1:3148678‑M2/71‑3 (MQ=255) cAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAAtg > 1:996957‑M2/1‑69 (MQ=255) cAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAAtg > 1:1487258‑M2/1‑69 (MQ=255) cAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAAtg > 1:1487942‑M2/1‑69 (MQ=255) cAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAAtg > 1:579732‑M2/1‑69 (MQ=255) cAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAAtg > 1:522082‑M2/1‑69 (MQ=255) cAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAAtg > 1:449853‑M2/1‑69 (MQ=255) cAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAAtg > 1:3823574‑M2/1‑69 (MQ=255) cAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAAtg > 1:2348740‑M2/1‑69 (MQ=255) ttAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAAt < 1:2994120/70‑1 (MQ=255) ttAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAAt < 1:3928805/70‑1 (MQ=255) ttAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAAt < 1:2994123/70‑1 (MQ=255) ttAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAAt < 1:2877953/70‑1 (MQ=255) ttAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAAt < 1:1442674/70‑1 (MQ=255) ttAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAAt < 1:156761/70‑1 (MQ=255) ttAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAAt < 1:2277179/70‑1 (MQ=255) cgATGCTTTCCTCTATGAGTCAAAAtggccccaattgtcttgtatttatttgtttttttaactttattat < 1:1886171‑M2/70‑46 (MQ=255) cgATGCTTTCCTCTATGAGTCAAAAtggccccaattgtcttgtatttatttgtttttttaactttattat < 1:3785628‑M2/70‑46 (MQ=255) cgATGCTTTCCTCTATGAGTCAAAAtggccccaattgtcttgtatttatttgtttttttaactttatta < 1:441481‑M2/69‑45 (MQ=255) cgATGCTTTCCTCTATGAGTCAAAAtggccccaatagtcttgtatttattt < 1:3186207‑M2/51‑27 (MQ=255) gCTTTCCTCTATGAGTCAAAAtggccccaattgtcttgtatttatttgtttttttaactttattatcaat < 1:111291‑M2/70‑50 (MQ=255) gCTTTCCTCTATGAGTCAAAAtggccccaattgtcttgtatttatttgtttttttaactttattatcaat < 1:645441‑M2/70‑50 (MQ=255) gCTTTCCTCTATGAGTCAAAAtggccccaattgtcttgtatttatttgtttttttaactttattatcaa < 1:2480162‑M2/69‑49 (MQ=255) ctATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTg > 1:3940959/1‑37 (MQ=255) ctATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCg > 1:197940/1‑71 (MQ=255) ctATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCg > 1:4051021/1‑71 (MQ=255) ctATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCg > 1:2663790/1‑71 (MQ=255) aTGAGTCAAAAtggccccaattgtcttgtatttatttgtttttttaactttattatcaataagttaaatc < 1:506934‑M2/70‑60 (MQ=255) aTGAGTCAAAAtggccccaattgtcttgtatttatttgtttttttaactttattatcaataagttaaatc < 1:1566153‑M2/70‑60 (MQ=255) aGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTa > 1:1982084/1‑70 (MQ=255) aGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTa > 1:277755/1‑70 (MQ=255) gTCAAAAtggccccaattgtcttgtatttatttgtttttttaactttattatcaataagttaaatcaaacc > 1:2038220‑M2/1‑7 (MQ=255) | ACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACA > W3110S.gb/4547599‑4547732 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |