| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | W3110S.gb | 644,304 | C→T | intergenic (‑78/+36) | rna ← / ← citT | ribonuclease I/citrate:succinate antiporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | W3110S.gb | 644,304 | 0 | C | T | 96.7% | 80.9 / ‑3.7 | 30 | intergenic (‑78/+36) | rna/citT | ribonuclease I/citrate:succinate antiporter |
| Reads supporting (aligned to +/- strand): ref base C (1/0); new base T (2/27); total (3/27) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.21e-01 | |||||||||||
GAACTCATACATACACTGAATACTATCTATTAAATCATAAAAAAGCCCGCCAGGTGGGCTTACCTGGCGGGCGTGATGATTTATTCAGCGTTTGGCGAACGTATTAGTTCCACATGGCGAGAATCGGCCAGCCA > W3110S.gb/644237‑644370 | gAACTCATACATACACTGAATACTATCTATTAAATCATAAAAAAGCCCGCCAGGTGGGCTTACCtggtgg > 1:2165695/1‑70 (MQ=255) cTCATACATACACTGAATACTATCTATTAAATCATAAAAAAGCCCGCCAGGTGGGCTTACCTGGTGGGCGt < 1:908569/71‑1 (MQ=255) cTCATACATACACTGAATACTATCTATTAAATCATAAAAAAGCCCGCCAGGTGGGCTTACCTGGTGGGCGt < 1:687770/71‑1 (MQ=255) cTCATACATACACTGAATACTATCTATTAAATCATAAAAAAGCCCGCCAGGTGGGCTTACCTGGTGGGCGt < 1:2210274/71‑1 (MQ=255) cTCATACATACACTGAATACTATCTATTAAATCATAAAAAAGCCCGCCAGGTGGGCTTACCTGGTGGGCGt < 1:1767286/71‑1 (MQ=255) tacaCTGAATACTATCTATTAAATCATAAAAAAGCCCGCCAGGTGGGCTTACCTGGTGGGCGTGATGAttt < 1:1633080/71‑1 (MQ=255) acTGAATACTATCTATTAAATCATAAAAAAGCCCGCCAGGTGGGCTTACCTGGTGGGCGt < 1:1360746/60‑1 (MQ=255) aTACTATCTATTAAATCATAAAAAAGCCCGCCAGGTGGGCTTACCTGGTGGGCGTGATGATTTa < 1:1071282/64‑1 (MQ=255) aCTATCTATTAAATCATAAAAAAGCCCGCCAGGTGGGCTTACCTGGTGGGCGTGATGATTTAtt > 1:774497/1‑64 (MQ=255) ctatctatTAAATCATAAAAAAGCCCGCCAGGTGGGCTTACCTGGCGGGCGTGATGATTTATTCAGCGttt > 1:4018346/1‑71 (MQ=255) tatctatTAAATCATAAAAAAGCCCGCCAGGTGGGCTTACCTGGTGGGCGtg < 1:699961/52‑1 (MQ=255) tatctatTAAATCATAAAAAAGCCCGCCAGGTGGGCTTACCTGGTGGGCGtg < 1:1867443/52‑1 (MQ=255) tctatTAAATCATAAAAAAGCCCGCCAGGTGGGCTTACCTGGTGGGCGTGATGATTTATTCAGCGTTTg < 1:1246465/69‑1 (MQ=255) tctatTAAATCATAAAAAAGCCCGCCAGGTGGGCTTACCTGGTGGGCGTGATGATTTATTCAGCGTTTg < 1:139158/69‑1 (MQ=255) ctatAAAATCATAAAAAAGCCCGCCAGGTGGGCTTACCTGGTGGGCGTGATGATTTa < 1:1569631/57‑1 (MQ=39) aaaTCATAAAAAAGCCCGCCAGGTGGGCTTACCTGGTGGGCGtga > 1:1035599/1‑45 (MQ=255) aTCATAAAAAAGCCCGCCAGGTGGGCTTACCTGGTGGGCGTGATGATTTATTCAGCGTTTg < 1:699867/61‑1 (MQ=255) tCATAAAAAAGCCCGCCAGGTGGGCTTACCTGGTGGGCGTGATGATTTATTCAGCGTTTg < 1:1628246/60‑1 (MQ=255) atatAAAAGCCCGCCAGGTGGGCTTACCTGGTGGGCGTGATGATTTATTCAGCGTTTg < 1:938550/58‑1 (MQ=39) aTAAAAAAGCCCGCCAGGTGGGCTTACCTGGTGGGCGTGATGATTTATTCAGCGTTTg < 1:171352/58‑1 (MQ=255) aTAAAAAAGCCCGCCAGGTGGGCTTACCTGGTGGGCGTGATGATTTATTCAGCGTTTg < 1:2826077/58‑1 (MQ=255) aTAAAAAAGCCCGCCAGGTGGGCTTACCTGGTGGGCGTGATGATTTATTCAGCGTTTg < 1:3416193/58‑1 (MQ=255) aTAAAAAAGCCCGCCAGGTGGGCTTACCTGGTGGGCGTGATGATTTATTCAGCGTTTg < 1:1529411/58‑1 (MQ=255) aTAAAAAAGCCCGCCAGGTGGGCTTACCTGGTGGGCGTGATGATTTATTCAGCGTTTg < 1:1100932/58‑1 (MQ=255) aTAAAAAAGCCCGCCAGGTGGGCTTACCTGGTGGGCGTGATGATTTATTCAGCGTTTg < 1:1035594/58‑1 (MQ=255) aTAAAAAAGCCCGCCAGGTGGGCTTACCTGGTGGGCGTGATGATTTATTCAGCGTTTGGCGAACGTATTa < 1:2519715/70‑1 (MQ=255) aTAAAAAAGCCCGCCAGGTGGGCTTACCTGGTGGGCGTGATGATTTATTCAGCGTTTGGCGAACGTATTa < 1:2982625/70‑1 (MQ=255) aTAAAAAAGCCCGCCAGGTGGGCTTACCTGGTGGGCGTGATGATTTATTCAGCGTTTGGCGAACGTATTa < 1:1344005/70‑1 (MQ=255) ccTGGTGGGCGTGATGATTTATTCAGCGTTTGGCGAACGTATTAGTTCca < 1:187536/50‑1 (MQ=255) cTGGTGGGCGTGATGATTTATTCAGCGTTTGGCGAACGTATTAGTTCCACATGGTGAGAATCGgccagcca < 1:621051/71‑1 (MQ=255) cTGGTGGGCGTGATGATTTATTCAGCGTTTGGCGAACGTATTAGTTCCACATGGCGAGAATCGgccagcca < 1:1290745/71‑1 (MQ=255) | GAACTCATACATACACTGAATACTATCTATTAAATCATAAAAAAGCCCGCCAGGTGGGCTTACCTGGCGGGCGTGATGATTTATTCAGCGTTTGGCGAACGTATTAGTTCCACATGGCGAGAATCGGCCAGCCA > W3110S.gb/644237‑644370 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |