| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | W3110S.gb | 1,292,238 | (T)5→6 | coding (420/1014 nt) | rssB → | response regulator of RpoS |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | W3110S.gb | 1,292,233 | 1 | . | T | 99.2% | 465.5 / ‑3.3 | 123 | coding (415/1014 nt) | rssB | response regulator of RpoS |
| Reads supporting (aligned to +/- strand): ref base . (1/0); new base T (122/0); total (123/0) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.92e-01 | |||||||||||
Only 100 of 124 total aligned reads displayed.
TCCCAGCATGTTTAATTCGCGCGTTGAGGAAGAGGAAAGG‑C‑TTTTTCGCGACTGGGATGCAATG > W3110S.gb/1292193‑1292256 | tCCCAGCATGTTTAATTCGCGCGTTGAGGAAGAGGAAAGGCC‑TTTTTCGCGACTGGGATGCAAt > 1:145397/1‑64 (MQ=255)tCCCAGCATGTTTAATTCGCGCGTTGAGGAAGAGGAAAGG‑CTTTTTTCGCGACt > 1:216967/1‑54 (MQ=39)tCCCAGCATGTTTAATTCGCGCGTTGAGGAAGAGGAAAGG‑CTTTTTTCGCGACTGGGAt > 1:977893/1‑59 (MQ=255)tCCCAGCATGTTTAATTCGCGCGTTGAGGAAGAGGAAAGG‑CTTTTTTCGCGACTGGGATGCAATg > 1:400088/1‑65 (MQ=255)tCCCAGCATGTTTAATTCGCGCGTTGAGGAAGAGGAAAGG‑CTTTTTTCGCGACTGGGATGCAATg > 1:542399/1‑65 (MQ=255)tCCCAGCATGTTTAATTCGCGCGTTGAGGAAGAGGAAAGG‑CTTTTTTCGCGACTGGGATGCAATg > 1:535219/1‑65 (MQ=255)tCCCAGCATGTTTAATTCGCGCGTTGAGGAAGAGGAAAGG‑CTTTTTTCGCGACTGGGATGCAATg > 1:528188/1‑65 (MQ=255)tCCCAGCATGTTTAATTCGCGCGTTGAGGAAGAGGAAAGG‑CTTTTTTCGCGACTGGGATGCAATg > 1:496618/1‑65 (MQ=255)tCCCAGCATGTTTAATTCGCGCGTTGAGGAAGAGGAAAGG‑CTTTTTTCGCGACTGGGATGCAATg > 1:490890/1‑65 (MQ=255)tCCCAGCATGTTTAATTCGCGCGTTGAGGAAGAGGAAAGG‑CTTTTTTCGCGACTGGGATGCAATg > 1:485646/1‑65 (MQ=255)tCCCAGCATGTTTAATTCGCGCGTTGAGGAAGAGGAAAGG‑CTTTTTTCGCGACTGGGATGCAATg > 1:483619/1‑65 (MQ=255)tCCCAGCATGTTTAATTCGCGCGTTGAGGAAGAGGAAAGG‑CTTTTTTCGCGACTGGGATGCAATg > 1:474316/1‑65 (MQ=255)tCCCAGCATGTTTAATTCGCGCGTTGAGGAAGAGGAAAGG‑CTTTTTTCGCGACTGGGATGCAATg > 1:446843/1‑65 (MQ=255)tCCCAGCATGTTTAATTCGCGCGTTGAGGAAGAGGAAAGG‑CTTTTTTCGCGACTGGGATGCAATg > 1:44223/1‑65 (MQ=255)tCCCAGCATGTTTAATTCGCGCGTTGAGGAAGAGGAAAGG‑CTTTTTTCGCGACTGGGATGCAATg > 1:428982/1‑65 (MQ=255)tCCCAGCATGTTTAATTCGCGCGTTGAGGAAGAGGAAAGG‑CTTTTTTCGCGACTGGGATGCAATg > 1:1852215/1‑65 (MQ=255)tCCCAGCATGTTTAATTCGCGCGTTGAGGAAGAGGAAAGG‑CTTTTTTCGCGACTGGGATGCAATg > 1:354518/1‑65 (MQ=255)tCCCAGCATGTTTAATTCGCGCGTTGAGGAAGAGGAAAGG‑CTTTTTTCGCGACTGGGATGCAATg > 1:340250/1‑65 (MQ=255)tCCCAGCATGTTTAATTCGCGCGTTGAGGAAGAGGAAAGG‑CTTTTTTCGCGACTGGGATGCAATg > 1:332022/1‑65 (MQ=255)tCCCAGCATGTTTAATTCGCGCGTTGAGGAAGAGGAAAGG‑CTTTTTTCGCGACTGGGATGCAATg > 1:329206/1‑65 (MQ=255)tCCCAGCATGTTTAATTCGCGCGTTGAGGAAGAGGAAAGG‑CTTTTTTCGCGACTGGGATGCAATg > 1:232044/1‑65 (MQ=255)tCCCAGCATGTTTAATTCGCGCGTTGAGGAAGAGGAAAGG‑CTTTTTTCGCGACTGGGATGCAATg > 1:227908/1‑65 (MQ=255)tCCCAGCATGTTTAATTCGCGCGTTGAGGAAGAGGAAAGG‑CTTTTTTCGCGACTGGGATGCAATg > 1:215273/1‑65 (MQ=255)tCCCAGCATGTTTAATTCGCGCGTTGAGGAAGAGGAAAGG‑CTTTTTTCGCGACTGGGATGCAATg > 1:1880577/1‑65 (MQ=255)tCCCAGCATGTTTAATTCGCGCGTTGAGGAAGAGGAAAGG‑CTTTTTTCGCGACTGGGATGCAATg > 1:1875329/1‑65 (MQ=255)tCCCAGCATGTTTAATTCGCGCGTTGAGGAAGAGGAAAGG‑CTTTTTTCGCGACTGGGATGCAATg > 1:1814355/1‑65 (MQ=255)tCCCAGCATGTTTAATTCGCGCGTTGAGGAAGAGGAAAGG‑CTTTTTTCGCGACTGGGATGCAATg > 1:855065/1‑65 (MQ=255)tCCCAGCATGTTTAATTCGCGCGTTGAGGAAGAGGAAAGG‑CTTTTTTCGCGACTGGGATGCAATg > 1:989474/1‑65 (MQ=255)tCCCAGCATGTTTAATTCGCGCGTTGAGGAAGAGGAAAGG‑CTTTTTTCGCGACTGGGATGCAATg > 1:969537/1‑65 (MQ=255)tCCCAGCATGTTTAATTCGCGCGTTGAGGAAGAGGAAAGG‑CTTTTTTCGCGACTGGGATGCAATg > 1:967679/1‑65 (MQ=255)tCCCAGCATGTTTAATTCGCGCGTTGAGGAAGAGGAAAGG‑CTTTTTTCGCGACTGGGATGCAATg > 1:96113/1‑65 (MQ=255)tCCCAGCATGTTTAATTCGCGCGTTGAGGAAGAGGAAAGG‑CTTTTTTCGCGACTGGGATGCAATg > 1:955197/1‑65 (MQ=255)tCCCAGCATGTTTAATTCGCGCGTTGAGGAAGAGGAAAGG‑CTTTTTTCGCGACTGGGATGCAATg > 1:942293/1‑65 (MQ=255)tCCCAGCATGTTTAATTCGCGCGTTGAGGAAGAGGAAAGG‑CTTTTTTCGCGACTGGGATGCAATg > 1:932327/1‑65 (MQ=255)tCCCAGCATGTTTAATTCGCGCGTTGAGGAAGAGGAAAGG‑CTTTTTTCGCGACTGGGATGCAATg > 1:918362/1‑65 (MQ=255)tCCCAGCATGTTTAATTCGCGCGTTGAGGAAGAGGAAAGG‑CTTTTTTCGCGACTGGGATGCAATg > 1:886061/1‑65 (MQ=255)tCCCAGCATGTTTAATTCGCGCGTTGAGGAAGAGGAAAGG‑CTTTTTTCGCGACTGGGATGCAATg > 1:883663/1‑65 (MQ=255)tCCCAGCATGTTTAATTCGCGCGTTGAGGAAGAGGAAAGG‑CTTTTTTCGCGACTGGGATGCAATg > 1:882161/1‑65 (MQ=255)tCCCAGCATGTTTAATTCGCGCGTTGAGGAAGAGGAAAGG‑CTTTTTTCGCGACTGGGATGCAATg > 1:578944/1‑65 (MQ=255)tCCCAGCATGTTTAATTCGCGCGTTGAGGAAGAGGAAAGG‑CTTTTTTCGCGACTGGGATGCAATg > 1:811494/1‑65 (MQ=255)tCCCAGCATGTTTAATTCGCGCGTTGAGGAAGAGGAAAGG‑CTTTTTTCGCGACTGGGATGCAATg > 1:802196/1‑65 (MQ=255)tCCCAGCATGTTTAATTCGCGCGTTGAGGAAGAGGAAAGG‑CTTTTTTCGCGACTGGGATGCAATg > 1:792559/1‑65 (MQ=255)tCCCAGCATGTTTAATTCGCGCGTTGAGGAAGAGGAAAGG‑CTTTTTTCGCGACTGGGATGCAATg > 1:761901/1‑65 (MQ=255)tCCCAGCATGTTTAATTCGCGCGTTGAGGAAGAGGAAAGG‑CTTTTTTCGCGACTGGGATGCAATg > 1:761626/1‑65 (MQ=255)tCCCAGCATGTTTAATTCGCGCGTTGAGGAAGAGGAAAGG‑CTTTTTTCGCGACTGGGATGCAATg > 1:750856/1‑65 (MQ=255)tCCCAGCATGTTTAATTCGCGCGTTGAGGAAGAGGAAAGG‑CTTTTTTCGCGACTGGGATGCAATg > 1:743570/1‑65 (MQ=255)tCCCAGCATGTTTAATTCGCGCGTTGAGGAAGAGGAAAGG‑CTTTTTTCGCGACTGGGATGCAATg > 1:687035/1‑65 (MQ=255)tCCCAGCATGTTTAATTCGCGCGTTGAGGAAGAGGAAAGG‑CTTTTTTCGCGACTGGGATGCAATg > 1:684117/1‑65 (MQ=255)tCCCAGCATGTTTAATTCGCGCGTTGAGGAAGAGGAAAGG‑CTTTTTTCGCGACTGGGATGCAATg > 1:626927/1‑65 (MQ=255)tCCCAGCATGTTTAATTCGCGCGTTGAGGAAGAGGAAAGG‑CTTTTTTCGCGACTGGGATGCAATg > 1:61786/1‑65 (MQ=255)tCCCAGCATGTTTAATTCGCGCGTTGAGGAAGAGGAAAGG‑CTTTTTTCGCGACTGGGATGCAATg > 1:1285627/1‑65 (MQ=255)tCCCAGCATGTTTAATTCGCGCGTTGAGGAAGAGGAAAGG‑CTTTTTTCGCGACTGGGATGCAATg > 1:1434368/1‑65 (MQ=255)tCCCAGCATGTTTAATTCGCGCGTTGAGGAAGAGGAAAGG‑CTTTTTTCGCGACTGGGATGCAATg > 1:1425777/1‑65 (MQ=255)tCCCAGCATGTTTAATTCGCGCGTTGAGGAAGAGGAAAGG‑CTTTTTTCGCGACTGGGATGCAATg > 1:1414755/1‑65 (MQ=255)tCCCAGCATGTTTAATTCGCGCGTTGAGGAAGAGGAAAGG‑CTTTTTTCGCGACTGGGATGCAATg > 1:141226/1‑65 (MQ=255)tCCCAGCATGTTTAATTCGCGCGTTGAGGAAGAGGAAAGG‑CTTTTTTCGCGACTGGGATGCAATg > 1:1392945/1‑65 (MQ=255)tCCCAGCATGTTTAATTCGCGCGTTGAGGAAGAGGAAAGG‑CTTTTTTCGCGACTGGGATGCAATg > 1:139083/1‑65 (MQ=255)tCCCAGCATGTTTAATTCGCGCGTTGAGGAAGAGGAAAGG‑CTTTTTTCGCGACTGGGATGCAATg > 1:138025/1‑65 (MQ=255)tCCCAGCATGTTTAATTCGCGCGTTGAGGAAGAGGAAAGG‑CTTTTTTCGCGACTGGGATGCAATg > 1:1379915/1‑65 (MQ=255)tCCCAGCATGTTTAATTCGCGCGTTGAGGAAGAGGAAAGG‑CTTTTTTCGCGACTGGGATGCAATg > 1:1366477/1‑65 (MQ=255)tCCCAGCATGTTTAATTCGCGCGTTGAGGAAGAGGAAAGG‑CTTTTTTCGCGACTGGGATGCAATg > 1:1352129/1‑65 (MQ=255)tCCCAGCATGTTTAATTCGCGCGTTGAGGAAGAGGAAAGG‑CTTTTTTCGCGACTGGGATGCAATg > 1:1328842/1‑65 (MQ=255)tCCCAGCATGTTTAATTCGCGCGTTGAGGAAGAGGAAAGG‑CTTTTTTCGCGACTGGGATGCAATg > 1:1315157/1‑65 (MQ=255)tCCCAGCATGTTTAATTCGCGCGTTGAGGAAGAGGAAAGG‑CTTTTTTCGCGACTGGGATGCAATg > 1:1456351/1‑65 (MQ=255)tCCCAGCATGTTTAATTCGCGCGTTGAGGAAGAGGAAAGG‑CTTTTTTCGCGACTGGGATGCAATg > 1:1273185/1‑65 (MQ=255)tCCCAGCATGTTTAATTCGCGCGTTGAGGAAGAGGAAAGG‑CTTTTTTCGCGACTGGGATGCAATg > 1:1266257/1‑65 (MQ=255)tCCCAGCATGTTTAATTCGCGCGTTGAGGAAGAGGAAAGG‑CTTTTTTCGCGACTGGGATGCAATg > 1:1255620/1‑65 (MQ=255)tCCCAGCATGTTTAATTCGCGCGTTGAGGAAGAGGAAAGG‑CTTTTTTCGCGACTGGGATGCAATg > 1:1227440/1‑65 (MQ=255)tCCCAGCATGTTTAATTCGCGCGTTGAGGAAGAGGAAAGG‑CTTTTTTCGCGACTGGGATGCAATg > 1:1204153/1‑65 (MQ=255)tCCCAGCATGTTTAATTCGCGCGTTGAGGAAGAGGAAAGG‑CTTTTTTCGCGACTGGGATGCAATg > 1:1166826/1‑65 (MQ=255)tCCCAGCATGTTTAATTCGCGCGTTGAGGAAGAGGAAAGG‑CTTTTTTCGCGACTGGGATGCAATg > 1:1120056/1‑65 (MQ=255)tCCCAGCATGTTTAATTCGCGCGTTGAGGAAGAGGAAAGG‑CTTTTTTCGCGACTGGGATGCAATg > 1:1068309/1‑65 (MQ=255)tCCCAGCATGTTTAATTCGCGCGTTGAGGAAGAGGAAAGG‑CTTTTTTCGCGACTGGGATGCAATg > 1:1046821/1‑65 (MQ=255)tCCCAGCATGTTTAATTCGCGCGTTGAGGAAGAGGAAAGG‑CTTTTTTCGCGACTGGGATGCAATg > 1:1034839/1‑65 (MQ=255)tCCCAGCATGTTTAATTCGCGCGTTGAGGAAGAGGAAAGG‑CTTTTTTCGCGACTGGGATGCAATg > 1:1024485/1‑65 (MQ=255)tCCCAGCATGTTTAATTCGCGCGTTGAGGAAGAGGAAAGG‑CTTTTTTCGCGACTGGGATGCAATg > 1:1480679/1‑65 (MQ=255)tCCCAGCATGTTTAATTCGCGCGTTGAGGAAGAGGAAAGG‑CTTTTTTCGCGACTGGGATGCAATg > 1:1768817/1‑65 (MQ=255)tCCCAGCATGTTTAATTCGCGCGTTGAGGAAGAGGAAAGG‑CTTTTTTCGCGACTGGGATGCAATg > 1:1737998/1‑65 (MQ=255)tCCCAGCATGTTTAATTCGCGCGTTGAGGAAGAGGAAAGG‑CTTTTTTCGCGACTGGGATGCAATg > 1:1724927/1‑65 (MQ=255)tCCCAGCATGTTTAATTCGCGCGTTGAGGAAGAGGAAAGG‑CTTTTTTCGCGACTGGGATGCAATg > 1:1724788/1‑65 (MQ=255)tCCCAGCATGTTTAATTCGCGCGTTGAGGAAGAGGAAAGG‑CTTTTTTCGCGACTGGGATGCAATg > 1:1717286/1‑65 (MQ=255)tCCCAGCATGTTTAATTCGCGCGTTGAGGAAGAGGAAAGG‑CTTTTTTCGCGACTGGGATGCAATg > 1:1702234/1‑65 (MQ=255)tCCCAGCATGTTTAATTCGCGCGTTGAGGAAGAGGAAAGG‑CTTTTTTCGCGACTGGGATGCAATg > 1:1698386/1‑65 (MQ=255)tCCCAGCATGTTTAATTCGCGCGTTGAGGAAGAGGAAAGG‑CTTTTTTCGCGACTGGGATGCAATg > 1:169597/1‑65 (MQ=255)tCCCAGCATGTTTAATTCGCGCGTTGAGGAAGAGGAAAGG‑CTTTTTTCGCGACTGGGATGCAATg > 1:1690481/1‑65 (MQ=255)tCCCAGCATGTTTAATTCGCGCGTTGAGGAAGAGGAAAGG‑CTTTTTTCGCGACTGGGATGCAATg > 1:1682009/1‑65 (MQ=255)tCCCAGCATGTTTAATTCGCGCGTTGAGGAAGAGGAAAGG‑CTTTTTTCGCGACTGGGATGCAATg > 1:1656167/1‑65 (MQ=255)tCCCAGCATGTTTAATTCGCGCGTTGAGGAAGAGGAAAGG‑CTTTTTTCGCGACTGGGATGCAATg > 1:1627050/1‑65 (MQ=255)tCCCAGCATGTTTAATTCGCGCGTTGAGGAAGAGGAAAGG‑CTTTTTTCGCGACTGGGATGCAATg > 1:1623150/1‑65 (MQ=255)tCCCAGCATGTTTAATTCGCGCGTTGAGGAAGAGGAAAGG‑CTTTTTTCGCGACTGGGATGCAATg > 1:1622818/1‑65 (MQ=255)tCCCAGCATGTTTAATTCGCGCGTTGAGGAAGAGGAAAGG‑CTTTTTTCGCGACTGGGATGCAATg > 1:1603847/1‑65 (MQ=255)tCCCAGCATGTTTAATTCGCGCGTTGAGGAAGAGGAAAGG‑CTTTTTTCGCGACTGGGATGCAATg > 1:1559070/1‑65 (MQ=255)tCCCAGCATGTTTAATTCGCGCGTTGAGGAAGAGGAAAGG‑CTTTTTTCGCGACTGGGATGCAATg > 1:1541696/1‑65 (MQ=255)tCCCAGCATGTTTAATTCGCGCGTTGAGGAAGAGGAAAGG‑CTTTTTTCGCGACTGGGATGCAATg > 1:1538512/1‑65 (MQ=255)tCCCAGCATGTTTAATTCGCGCGTTGAGGAAGAGGAAAGG‑CTTTTTTCGCGACTGGGATGCAATg > 1:1536296/1‑65 (MQ=255)tCCCAGCATGTTTAATTCGCGCGTTGAGGAAGAGGAAAGG‑CTTTTTTCGCGACTGGGATGCAATg > 1:1494396/1‑65 (MQ=255)tCCCAGCATGTTTAATTCGCGCGTTGAGGAAGAGGAAAGG‑CTTTTTTCGCGACTGGGATGCAATg > 1:1489210/1‑65 (MQ=255)tCCCAGCATGTTTAATTCGCGCGTTGAGGAAGAGGAAAGG‑CTTTTTTCGCGACTGGGATGCAATg > 1:1017173/1‑65 (MQ=255)tCCCAGCATGTTTAATTCGCGAGTTGAGGAAGAGGAAAGG‑CTTTTTTCGCGACTGGGATGCAATg > 1:1637915/1‑65 (MQ=255)tCCCAGCATGTTTAAATCGCGCGTTGAGGAAGAGGAAAGG‑C‑ttt > 1:1853213/1‑44 (MQ=255) | TCCCAGCATGTTTAATTCGCGCGTTGAGGAAGAGGAAAGG‑C‑TTTTTCGCGACTGGGATGCAATG > W3110S.gb/1292193‑1292256 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |