| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | W3110S.gb | 1,960,591 | +A | coding (390/747 nt) | cutC ← | copper homeostasis protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | W3110S.gb | 1,960,588 | 1 | . | A | 90.7% | 542.5 / 46.3 | 162 | coding (393/747 nt) | cutC | copper homeostasis protein |
| Reads supporting (aligned to +/- strand): ref base . (15/0); new base A (147/0); total (162/0) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 162 total aligned reads displayed.
GCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAGTGTATAT‑AAAGGGTT > W3110S.gb/1960533‑1960596 | gcgcTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAAGGGtt > 1:4244/4‑65 (MQ=255)gCCCTGATGTCAGTACCCGGGCAATGCCCAATTCGGCAAGATTATTGAGTGTATAT‑AAAagggt > 1:702858/1‑62 (MQ=255)gCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAAGGGtt > 1:319682/1‑65 (MQ=255)gCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAAGGGtt > 1:508793/1‑65 (MQ=255)gCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAAGGGtt > 1:470818/1‑65 (MQ=255)gCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAAGGGtt > 1:464401/1‑65 (MQ=255)gCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAAGGGtt > 1:460491/1‑65 (MQ=255)gCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAAGGGtt > 1:444390/1‑65 (MQ=255)gCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAAGGGtt > 1:411263/1‑65 (MQ=255)gCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAAGGGtt > 1:386248/1‑65 (MQ=255)gCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAAGGGtt > 1:376907/1‑65 (MQ=255)gCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAAGGGtt > 1:353845/1‑65 (MQ=255)gCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAAGGGtt > 1:328240/1‑65 (MQ=255)gCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAAGGGtt > 1:529302/1‑65 (MQ=255)gCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAAGGGtt > 1:307693/1‑65 (MQ=255)gCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAAGGGtt > 1:267447/1‑65 (MQ=255)gCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAAGGGtt > 1:262213/1‑65 (MQ=255)gCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAAGGGtt > 1:254827/1‑65 (MQ=255)gCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAAGGGtt > 1:232353/1‑65 (MQ=255)gCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAAGGGtt > 1:211497/1‑65 (MQ=255)gCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAAGGGtt > 1:201979/1‑65 (MQ=255)gCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAAGGGtt > 1:1880178/1‑65 (MQ=255)gCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAAGGGtt > 1:1871305/1‑65 (MQ=255)gCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAAGGGtt > 1:1000035/1‑65 (MQ=255)gCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAAGGGtt > 1:1843852/1‑65 (MQ=255)gCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAAGGGtt > 1:789110/1‑65 (MQ=255)gCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAAGGGtt > 1:97210/1‑65 (MQ=255)gCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAAGGGtt > 1:942519/1‑65 (MQ=255)gCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAAGGGtt > 1:941459/1‑65 (MQ=255)gCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAAGGGtt > 1:916916/1‑65 (MQ=255)gCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAAGGGtt > 1:903136/1‑65 (MQ=255)gCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAAGGGtt > 1:88588/1‑65 (MQ=255)gCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAAGGGtt > 1:867264/1‑65 (MQ=255)gCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAAGGGtt > 1:842055/1‑65 (MQ=255)gCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAAGGGtt > 1:820797/1‑65 (MQ=255)gCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAAGGGtt > 1:805606/1‑65 (MQ=255)gCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAAGGGtt > 1:802322/1‑65 (MQ=255)gCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAAGGGtt > 1:510422/1‑65 (MQ=255)gCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAAGGGtt > 1:758684/1‑65 (MQ=255)gCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAAGGGtt > 1:753394/1‑65 (MQ=255)gCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAAGGGtt > 1:750563/1‑65 (MQ=255)gCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAAGGGtt > 1:728707/1‑65 (MQ=255)gCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAAGGGtt > 1:67998/1‑65 (MQ=255)gCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAAGGGtt > 1:671350/1‑65 (MQ=255)gCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAAGGGtt > 1:643758/1‑65 (MQ=255)gCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAAGGGtt > 1:624752/1‑65 (MQ=255)gCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAAGGGtt > 1:597935/1‑65 (MQ=255)gCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAAGGGtt > 1:591049/1‑65 (MQ=255)gCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAAGGGtt > 1:186267/1‑65 (MQ=255)gCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAAGGGtt > 1:1209864/1‑65 (MQ=255)gCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAAGGGtt > 1:1420680/1‑65 (MQ=255)gCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAAGGGtt > 1:1813730/1‑65 (MQ=255)gCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAAGGGtt > 1:1373356/1‑65 (MQ=255)gCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAAGGGtt > 1:1364441/1‑65 (MQ=255)gCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAAGGGtt > 1:1338322/1‑65 (MQ=255)gCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAAGGGtt > 1:1313037/1‑65 (MQ=255)gCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAAGGGtt > 1:1307634/1‑65 (MQ=255)gCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAAGGGtt > 1:1299883/1‑65 (MQ=255)gCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAAGGGtt > 1:1278159/1‑65 (MQ=255)gCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAAGGGtt > 1:1258197/1‑65 (MQ=255)gCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAAGGGtt > 1:1220352/1‑65 (MQ=255)gCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAAGGGtt > 1:1394368/1‑65 (MQ=255)gCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAAGGGtt > 1:1178853/1‑65 (MQ=255)gCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAAGGGtt > 1:1171603/1‑65 (MQ=255)gCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAAGGGtt > 1:1145135/1‑65 (MQ=255)gCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAAGGGtt > 1:1105953/1‑65 (MQ=255)gCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAAGGGtt > 1:1094079/1‑65 (MQ=255)gCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAAGGGtt > 1:109402/1‑65 (MQ=255)gCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAAGGGtt > 1:1076990/1‑65 (MQ=255)gCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAAGGGtt > 1:1057305/1‑65 (MQ=255)gCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAAGGGtt > 1:1051735/1‑65 (MQ=255)gCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAAGGGtt > 1:1035509/1‑65 (MQ=255)gCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAAGGGtt > 1:1486955/1‑65 (MQ=255)gCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAAGGGtt > 1:180856/1‑65 (MQ=255)gCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAAGGGtt > 1:1793811/1‑65 (MQ=255)gCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAAGGGtt > 1:179027/1‑65 (MQ=255)gCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAAGGGtt > 1:1768343/1‑65 (MQ=255)gCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAAGGGtt > 1:1726878/1‑65 (MQ=255)gCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAAGGGtt > 1:1706954/1‑65 (MQ=255)gCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAAGGGtt > 1:1684292/1‑65 (MQ=255)gCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAAGGGtt > 1:1677889/1‑65 (MQ=255)gCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAAGGGtt > 1:1657379/1‑65 (MQ=255)gCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAAGGGtt > 1:1636200/1‑65 (MQ=255)gCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAAGGGtt > 1:156280/1‑65 (MQ=255)gCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAAGGGtt > 1:1483582/1‑65 (MQ=255)gCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAAGGGtt > 1:1523286/1‑65 (MQ=255)gCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAAGGGtt > 1:1528810/1‑65 (MQ=255)gCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAAGGGtt > 1:1535753/1‑65 (MQ=255)gCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAAGGGtt > 1:1542248/1‑65 (MQ=255)gCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAAGGGtt > 1:1544216/1‑65 (MQ=255)gCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAAGGGtt > 1:158653/1‑65 (MQ=255)gCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAAGGGtt > 1:1573706/1‑65 (MQ=255)gCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAGTGTATAT‑AAAagggt > 1:370263/1‑62 (MQ=255)gCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAGTGTATAT‑AAAagggt > 1:1102445/1‑62 (MQ=255)gCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAGTGTATAT‑AAAagggt > 1:1715489/1‑62 (MQ=255)gCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAGTGTATAT‑AAAagggt > 1:724978/1‑62 (MQ=255)gCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAGTGTATAT‑AAAagggt > 1:1629061/1‑62 (MQ=255)gCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAGTGTATAT‑AAAagggt > 1:123705/1‑62 (MQ=255)gCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAGTGTATAT‑AAAagggt > 1:124655/1‑62 (MQ=255)gCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGAAAGATTATTGAGTGTATAT‑AAAagggt > 1:763651/1‑62 (MQ=255) | GCCCTGATGTCAGTACCCGGGCAATGCCCAATTCCGCAAGATTATTGAGTGTATAT‑AAAGGGTT > W3110S.gb/1960533‑1960596 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |