Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	2586877	2587677	801	90 [0]	[0] 48	acrD	aminoglycoside/multidrug efflux system

TGGACCCGGCGAAACTCAACAGTTTCCAGATGACGGCTAAAGATGTCACTGATGCCATTGAGTC  >  W3110S.gb/2586813‑2586876                                                                | tggACCCGGCGAAACTCAACAGTTTCCAGATGACGGCTAAAGATGTCACTGATGCCATTGAGTc  <  1:376542/64‑1 (MQ=255) tggACCCGGCGAAACTCAACAGTTTCCAGATGACGGCTAAAGATGTCACTGATGCCATTGAGTc  <  1:579424/64‑1 (MQ=255) tggACCCGGCGAAACTCAACAGTTTCCAGATGACGGCTAAAGATGTCACTGATGCCATTGAGTc  <  1:562218/64‑1 (MQ=255) tggACCCGGCGAAACTCAACAGTTTCCAGATGACGGCTAAAGATGTCACTGATGCCATTGAGTc  <  1:504989/64‑1 (MQ=255) tggACCCGGCGAAACTCAACAGTTTCCAGATGACGGCTAAAGATGTCACTGATGCCATTGAGTc  <  1:490803/64‑1 (MQ=255) tggACCCGGCGAAACTCAACAGTTTCCAGATGACGGCTAAAGATGTCACTGATGCCATTGAGTc  <  1:448288/64‑1 (MQ=255) tggACCCGGCGAAACTCAACAGTTTCCAGATGACGGCTAAAGATGTCACTGATGCCATTGAGTc  <  1:445819/64‑1 (MQ=255) tggACCCGGCGAAACTCAACAGTTTCCAGATGACGGCTAAAGATGTCACTGATGCCATTGAGTc  <  1:439640/64‑1 (MQ=255) tggACCCGGCGAAACTCAACAGTTTCCAGATGACGGCTAAAGATGTCACTGATGCCATTGAGTc  <  1:404052/64‑1 (MQ=255) tggACCCGGCGAAACTCAACAGTTTCCAGATGACGGCTAAAGATGTCACTGATGCCATTGAGTc  <  1:389875/64‑1 (MQ=255) tggACCCGGCGAAACTCAACAGTTTCCAGATGACGGCTAAAGATGTCACTGATGCCATTGAGTc  <  1:38119/64‑1 (MQ=255) tggACCCGGCGAAACTCAACAGTTTCCAGATGACGGCTAAAGATGTCACTGATGCCATTGAGTc  <  1:585991/64‑1 (MQ=255) tggACCCGGCGAAACTCAACAGTTTCCAGATGACGGCTAAAGATGTCACTGATGCCATTGAGTc  <  1:353073/64‑1 (MQ=255) tggACCCGGCGAAACTCAACAGTTTCCAGATGACGGCTAAAGATGTCACTGATGCCATTGAGTc  <  1:338400/64‑1 (MQ=255) tggACCCGGCGAAACTCAACAGTTTCCAGATGACGGCTAAAGATGTCACTGATGCCATTGAGTc  <  1:330617/64‑1 (MQ=255) tggACCCGGCGAAACTCAACAGTTTCCAGATGACGGCTAAAGATGTCACTGATGCCATTGAGTc  <  1:280501/64‑1 (MQ=255) tggACCCGGCGAAACTCAACAGTTTCCAGATGACGGCTAAAGATGTCACTGATGCCATTGAGTc  <  1:27257/64‑1 (MQ=255) tggACCCGGCGAAACTCAACAGTTTCCAGATGACGGCTAAAGATGTCACTGATGCCATTGAGTc  <  1:257542/64‑1 (MQ=255) tggACCCGGCGAAACTCAACAGTTTCCAGATGACGGCTAAAGATGTCACTGATGCCATTGAGTc  <  1:199190/64‑1 (MQ=255) tggACCCGGCGAAACTCAACAGTTTCCAGATGACGGCTAAAGATGTCACTGATGCCATTGAGTc  <  1:1876582/64‑1 (MQ=255) tggACCCGGCGAAACTCAACAGTTTCCAGATGACGGCTAAAGATGTCACTGATGCCATTGAGTc  <  1:1029004/64‑1 (MQ=255) tggACCCGGCGAAACTCAACAGTTTCCAGATGACGGCTAAAGATGTCACTGATGCCATTGAGTc  <  1:1862752/64‑1 (MQ=255) tggACCCGGCGAAACTCAACAGTTTCCAGATGACGGCTAAAGATGTCACTGATGCCATTGAGTc  <  1:770497/64‑1 (MQ=255) tggACCCGGCGAAACTCAACAGTTTCCAGATGACGGCTAAAGATGTCACTGATGCCATTGAGTc  <  1:981466/64‑1 (MQ=255) tggACCCGGCGAAACTCAACAGTTTCCAGATGACGGCTAAAGATGTCACTGATGCCATTGAGTc  <  1:973356/64‑1 (MQ=255) tggACCCGGCGAAACTCAACAGTTTCCAGATGACGGCTAAAGATGTCACTGATGCCATTGAGTc  <  1:891336/64‑1 (MQ=255) tggACCCGGCGAAACTCAACAGTTTCCAGATGACGGCTAAAGATGTCACTGATGCCATTGAGTc  <  1:868894/64‑1 (MQ=255) tggACCCGGCGAAACTCAACAGTTTCCAGATGACGGCTAAAGATGTCACTGATGCCATTGAGTc  <  1:868707/64‑1 (MQ=255) tggACCCGGCGAAACTCAACAGTTTCCAGATGACGGCTAAAGATGTCACTGATGCCATTGAGTc  <  1:856639/64‑1 (MQ=255) tggACCCGGCGAAACTCAACAGTTTCCAGATGACGGCTAAAGATGTCACTGATGCCATTGAGTc  <  1:846268/64‑1 (MQ=255) tggACCCGGCGAAACTCAACAGTTTCCAGATGACGGCTAAAGATGTCACTGATGCCATTGAGTc  <  1:803058/64‑1 (MQ=255) tggACCCGGCGAAACTCAACAGTTTCCAGATGACGGCTAAAGATGTCACTGATGCCATTGAGTc  <  1:795227/64‑1 (MQ=255) tggACCCGGCGAAACTCAACAGTTTCCAGATGACGGCTAAAGATGTCACTGATGCCATTGAGTc  <  1:775182/64‑1 (MQ=255) tggACCCGGCGAAACTCAACAGTTTCCAGATGACGGCTAAAGATGTCACTGATGCCATTGAGTc  <  1:1871387/64‑1 (MQ=255) tggACCCGGCGAAACTCAACAGTTTCCAGATGACGGCTAAAGATGTCACTGATGCCATTGAGTc  <  1:756572/64‑1 (MQ=255) tggACCCGGCGAAACTCAACAGTTTCCAGATGACGGCTAAAGATGTCACTGATGCCATTGAGTc  <  1:722048/64‑1 (MQ=255) tggACCCGGCGAAACTCAACAGTTTCCAGATGACGGCTAAAGATGTCACTGATGCCATTGAGTc  <  1:68180/64‑1 (MQ=255) tggACCCGGCGAAACTCAACAGTTTCCAGATGACGGCTAAAGATGTCACTGATGCCATTGAGTc  <  1:656990/64‑1 (MQ=255) tggACCCGGCGAAACTCAACAGTTTCCAGATGACGGCTAAAGATGTCACTGATGCCATTGAGTc  <  1:656333/64‑1 (MQ=255) tggACCCGGCGAAACTCAACAGTTTCCAGATGACGGCTAAAGATGTCACTGATGCCATTGAGTc  <  1:613389/64‑1 (MQ=255) tggACCCGGCGAAACTCAACAGTTTCCAGATGACGGCTAAAGATGTCACTGATGCCATTGAGTc  <  1:606394/64‑1 (MQ=255) tggACCCGGCGAAACTCAACAGTTTCCAGATGACGGCTAAAGATGTCACTGATGCCATTGAGTc  <  1:604823/64‑1 (MQ=255) tggACCCGGCGAAACTCAACAGTTTCCAGATGACGGCTAAAGATGTCACTGATGCCATTGAGTc  <  1:604808/64‑1 (MQ=255) tggACCCGGCGAAACTCAACAGTTTCCAGATGACGGCTAAAGATGTCACTGATGCCATTGAGTc  <  1:1184097/64‑1 (MQ=255) tggACCCGGCGAAACTCAACAGTTTCCAGATGACGGCTAAAGATGTCACTGATGCCATTGAGTc  <  1:1853167/64‑1 (MQ=255) tggACCCGGCGAAACTCAACAGTTTCCAGATGACGGCTAAAGATGTCACTGATGCCATTGAGTc  <  1:1416926/64‑1 (MQ=255) tggACCCGGCGAAACTCAACAGTTTCCAGATGACGGCTAAAGATGTCACTGATGCCATTGAGTc  <  1:1416443/64‑1 (MQ=255) tggACCCGGCGAAACTCAACAGTTTCCAGATGACGGCTAAAGATGTCACTGATGCCATTGAGTc  <  1:1390551/64‑1 (MQ=255) tggACCCGGCGAAACTCAACAGTTTCCAGATGACGGCTAAAGATGTCACTGATGCCATTGAGTc  <  1:1366990/64‑1 (MQ=255) tggACCCGGCGAAACTCAACAGTTTCCAGATGACGGCTAAAGATGTCACTGATGCCATTGAGTc  <  1:1334306/64‑1 (MQ=255) tggACCCGGCGAAACTCAACAGTTTCCAGATGACGGCTAAAGATGTCACTGATGCCATTGAGTc  <  1:1306544/64‑1 (MQ=255) tggACCCGGCGAAACTCAACAGTTTCCAGATGACGGCTAAAGATGTCACTGATGCCATTGAGTc  <  1:1249486/64‑1 (MQ=255) tggACCCGGCGAAACTCAACAGTTTCCAGATGACGGCTAAAGATGTCACTGATGCCATTGAGTc  <  1:1246770/64‑1 (MQ=255) tggACCCGGCGAAACTCAACAGTTTCCAGATGACGGCTAAAGATGTCACTGATGCCATTGAGTc  <  1:1194167/64‑1 (MQ=255) tggACCCGGCGAAACTCAACAGTTTCCAGATGACGGCTAAAGATGTCACTGATGCCATTGAGTc  <  1:1436145/64‑1 (MQ=255) tggACCCGGCGAAACTCAACAGTTTCCAGATGACGGCTAAAGATGTCACTGATGCCATTGAGTc  <  1:1179820/64‑1 (MQ=255) tggACCCGGCGAAACTCAACAGTTTCCAGATGACGGCTAAAGATGTCACTGATGCCATTGAGTc  <  1:1172316/64‑1 (MQ=255) tggACCCGGCGAAACTCAACAGTTTCCAGATGACGGCTAAAGATGTCACTGATGCCATTGAGTc  <  1:1172254/64‑1 (MQ=255) tggACCCGGCGAAACTCAACAGTTTCCAGATGACGGCTAAAGATGTCACTGATGCCATTGAGTc  <  1:1167675/64‑1 (MQ=255) tggACCCGGCGAAACTCAACAGTTTCCAGATGACGGCTAAAGATGTCACTGATGCCATTGAGTc  <  1:1150991/64‑1 (MQ=255) tggACCCGGCGAAACTCAACAGTTTCCAGATGACGGCTAAAGATGTCACTGATGCCATTGAGTc  <  1:1139120/64‑1 (MQ=255) tggACCCGGCGAAACTCAACAGTTTCCAGATGACGGCTAAAGATGTCACTGATGCCATTGAGTc  <  1:1124449/64‑1 (MQ=255) tggACCCGGCGAAACTCAACAGTTTCCAGATGACGGCTAAAGATGTCACTGATGCCATTGAGTc  <  1:1056557/64‑1 (MQ=255) tggACCCGGCGAAACTCAACAGTTTCCAGATGACGGCTAAAGATGTCACTGATGCCATTGAGTc  <  1:1043186/64‑1 (MQ=255) tggACCCGGCGAAACTCAACAGTTTCCAGATGACGGCTAAAGATGTCACTGATGCCATTGAGTc  <  1:1039380/64‑1 (MQ=255) tggACCCGGCGAAACTCAACAGTTTCCAGATGACGGCTAAAGATGTCACTGATGCCATTGAGTc  <  1:1684701/64‑1 (MQ=255) tggACCCGGCGAAACTCAACAGTTTCCAGATGACGGCTAAAGATGTCACTGATGCCATTGAGTc  <  1:1851934/64‑1 (MQ=255) tggACCCGGCGAAACTCAACAGTTTCCAGATGACGGCTAAAGATGTCACTGATGCCATTGAGTc  <  1:1851866/64‑1 (MQ=255) tggACCCGGCGAAACTCAACAGTTTCCAGATGACGGCTAAAGATGTCACTGATGCCATTGAGTc  <  1:1840618/64‑1 (MQ=255) tggACCCGGCGAAACTCAACAGTTTCCAGATGACGGCTAAAGATGTCACTGATGCCATTGAGTc  <  1:181855/64‑1 (MQ=255) tggACCCGGCGAAACTCAACAGTTTCCAGATGACGGCTAAAGATGTCACTGATGCCATTGAGTc  <  1:1786385/64‑1 (MQ=255) tggACCCGGCGAAACTCAACAGTTTCCAGATGACGGCTAAAGATGTCACTGATGCCATTGAGTc  <  1:1748998/64‑1 (MQ=255) tggACCCGGCGAAACTCAACAGTTTCCAGATGACGGCTAAAGATGTCACTGATGCCATTGAGTc  <  1:1747824/64‑1 (MQ=255) tggACCCGGCGAAACTCAACAGTTTCCAGATGACGGCTAAAGATGTCACTGATGCCATTGAGTc  <  1:171677/64‑1 (MQ=255) tggACCCGGCGAAACTCAACAGTTTCCAGATGACGGCTAAAGATGTCACTGATGCCATTGAGTc  <  1:1714029/64‑1 (MQ=255) tggACCCGGCGAAACTCAACAGTTTCCAGATGACGGCTAAAGATGTCACTGATGCCATTGAGTc  <  1:1466730/64‑1 (MQ=255) tggACCCGGCGAAACTCAACAGTTTCCAGATGACGGCTAAAGATGTCACTGATGCCATTGAGTc  <  1:1618512/64‑1 (MQ=255) tggACCCGGCGAAACTCAACAGTTTCCAGATGACGGCTAAAGATGTCACTGATGCCATTGAGTc  <  1:161027/64‑1 (MQ=255) tggACCCGGCGAAACTCAACAGTTTCCAGATGACGGCTAAAGATGTCACTGATGCCATTGAGTc  <  1:160425/64‑1 (MQ=255) tggACCCGGCGAAACTCAACAGTTTCCAGATGACGGCTAAAGATGTCACTGATGCCATTGAGTc  <  1:154900/64‑1 (MQ=255) tggACCCGGCGAAACTCAACAGTTTCCAGATGACGGCTAAAGATGTCACTGATGCCATTGAGTc  <  1:152369/64‑1 (MQ=255) tggACCCGGCGAAACTCAACAGTTTCCAGATGACGGCTAAAGATGTCACTGATGCCATTGAGTc  <  1:150628/64‑1 (MQ=255) tggACCCGGCGAAACTCAACAGTTTCCAGATGACGGCTAAAGATGTCACTGATGCCATTGAGTc  <  1:1488652/64‑1 (MQ=255) tggACCCGGCGAAACTCAACAGTTTCCAGATGACGGCTAAAGATGTCACTGATGCCATTGAGTc  <  1:1472621/64‑1 (MQ=255) tggACCCGGCGAAACTCAACAGTTTCCAGATGACGGCTAAAGATGTCACTGATGCCATTGAGTc  <  1:1471300/64‑1 (MQ=255)  ggACCCGGCGAAACTCAACAGTTTCCAGATGACGGCTAAAGATGTCACTGATGCCATTGAGTc  <  1:297104/63‑1 (MQ=255)  ggACCCGGCGAAACTCAACAGTTTCCAGATGACGGCTAAAGATGTCACTGATGCCATTGAGTc  <  1:608378/63‑1 (MQ=255)         gCGAAACTCAACAGTTTCCATATGACGGCTAAAGATGTCACTGATGCCATTGAGTc  <  1:1380312/56‑1 (MQ=255)                  aaCAGTTTCCAGATGACGGCTAAAGATGTCACTGATGCCATTGAGTc  <  1:293079/47‑1 (MQ=255)                           cAGATGACGGCTAAAGATGTCACTGATGCCATTGAGTc  <  1:807205/38‑1 (MQ=255)                                                                | TGGACCCGGCGAAACTCAACAGTTTCCAGATGACGGCTAAAGATGTCACTGATGCCATTGAGTC  >  W3110S.gb/2586813‑2586876

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑