Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	2709015	2709018	4	24 [0]	[0] 10	rpoE/nadB	RNA polymerase, sigma 24 (sigma E) factor/quinolinate synthase, L‑aspartate oxidase (B protein) subunit

CTCTTTTTCTCGCCGCCCTGCGTCAGCGTGTTTAGCAACTGTAACAAATATTAAAATAGCAGGTG  >  W3110S.gb/2708950‑2709014                                                                 | ctctTTTTCTCGCCGCCCTGCGTCAGCGTGTTTAGCAACTGTAACAAATATTAAAATAGCAGgtg  >  1:1768191/1‑65 (MQ=255) ctctTTTTCTCGCCGCCCTGCGTCAGCGTGTTTAGCAACTGTAACAAATATTAAAATAGCAGgtg  >  1:887925/1‑65 (MQ=255) ctctTTTTCTCGCCGCCCTGCGTCAGCGTGTTTAGCAACTGTAACAAATATTAAAATAGCAGgtg  >  1:818960/1‑65 (MQ=255) ctctTTTTCTCGCCGCCCTGCGTCAGCGTGTTTAGCAACTGTAACAAATATTAAAATAGCAGgtg  >  1:815928/1‑65 (MQ=255) ctctTTTTCTCGCCGCCCTGCGTCAGCGTGTTTAGCAACTGTAACAAATATTAAAATAGCAGgtg  >  1:769468/1‑65 (MQ=255) ctctTTTTCTCGCCGCCCTGCGTCAGCGTGTTTAGCAACTGTAACAAATATTAAAATAGCAGgtg  >  1:355802/1‑65 (MQ=255) ctctTTTTCTCGCCGCCCTGCGTCAGCGTGTTTAGCAACTGTAACAAATATTAAAATAGCAGgtg  >  1:316778/1‑65 (MQ=255) ctctTTTTCTCGCCGCCCTGCGTCAGCGTGTTTAGCAACTGTAACAAATATTAAAATAGCAGgtg  >  1:280486/1‑65 (MQ=255) ctctTTTTCTCGCCGCCCTGCGTCAGCGTGTTTAGCAACTGTAACAAATATTAAAATAGCAGgtg  >  1:277831/1‑65 (MQ=255) ctctTTTTCTCGCCGCCCTGCGTCAGCGTGTTTAGCAACTGTAACAAATATTAAAATAGCAGgtg  >  1:1858664/1‑65 (MQ=255) ctctTTTTCTCGCCGCCCTGCGTCAGCGTGTTTAGCAACTGTAACAAATATTAAAATAGCAGgtg  >  1:1817848/1‑65 (MQ=255) ctctTTTTCTCGCCGCCCTGCGTCAGCGTGTTTAGCAACTGTAACAAATATTAAAATAGCAGgtg  >  1:1772633/1‑65 (MQ=255) ctctTTTTCTCGCCGCCCTGCGTCAGCGTGTTTAGCAACTGTAACAAATATTAAAATAGCAGgtg  >  1:1028325/1‑65 (MQ=255) ctctTTTTCTCGCCGCCCTGCGTCAGCGTGTTTAGCAACTGTAACAAATATTAAAATAGCAGgtg  >  1:1726495/1‑65 (MQ=255) ctctTTTTCTCGCCGCCCTGCGTCAGCGTGTTTAGCAACTGTAACAAATATTAAAATAGCAGgtg  >  1:1701139/1‑65 (MQ=255) ctctTTTTCTCGCCGCCCTGCGTCAGCGTGTTTAGCAACTGTAACAAATATTAAAATAGCAGgtg  >  1:1696691/1‑65 (MQ=255) ctctTTTTCTCGCCGCCCTGCGTCAGCGTGTTTAGCAACTGTAACAAATATTAAAATAGCAGgtg  >  1:1611378/1‑65 (MQ=255) ctctTTTTCTCGCCGCCCTGCGTCAGCGTGTTTAGCAACTGTAACAAATATTAAAATAGCAGgtg  >  1:1524119/1‑65 (MQ=255) ctctTTTTCTCGCCGCCCTGCGTCAGCGTGTTTAGCAACTGTAACAAATATTAAAATAGCAGgtg  >  1:1514544/1‑65 (MQ=255) ctctTTTTCTCGCCGCCCTGCGTCAGCGTGTTTAGCAACTGTAACAAATATTAAAATAGCAGgtg  >  1:151207/1‑65 (MQ=255) ctctTTTTCTCGCCGCCCTGCGTCAGCGTGTTTAGCAACTGTAACAAATATTAAAATAGCAGgtg  >  1:1462818/1‑65 (MQ=255) ctctTTTTCTCGCCGCCCTGCGTCAGCGTGTTTAGCAACTGTAACAAATATTAAAATAGCAGgtg  >  1:140731/1‑65 (MQ=255) ctctTTTTCTCGCCGCCCTGCGTCAGCGTGTTTAGCAACTGTAACAAATATTAAAATAGCAGgtg  >  1:1313667/1‑65 (MQ=255) ctctTTTTCTCGCCGCCCTGCGTCAGCGTGTTTAGCAACTGTAACAAATATTAAAATAGCAGgtg  >  1:1308533/1‑65 (MQ=255)                                                                 | CTCTTTTTCTCGCCGCCCTGCGTCAGCGTGTTTAGCAACTGTAACAAATATTAAAATAGCAGGTG  >  W3110S.gb/2708950‑2709014

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑