Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	250290	250621	332	40 [0]	[0] 3	mbhA	ECK0231:JW5812:b0230; flagellar system protein, promoterless fragment

CGTGATGTGAATGAGAAAACGGCGCTGCTGAAGAAGAAATCCGCCACCGAGCTTGGTGAGCTGGC  >  W3110S.gb/250225‑250289                                                                 | cgTGATGTGAATGAGAAAACTGCGCTGCTGAAGAAGAAATCCGCCACCGAGCTTGGTGAGCTGGc  <  1:1172633/65‑1 (MQ=255) cgTGATGTGAATGAGAAAACGGCGCTGCTGAAGAAGAAATCCGCCACCGAGCTTGGTGAGCTTGc  <  1:239653/65‑1 (MQ=255) cgTGATGTGAATGAGAAAACGGCGCTGCTGAAGAAGAAATCCGCCACCGAGCTTGGTGAGCTGGc  <  1:498815/65‑1 (MQ=255) cgTGATGTGAATGAGAAAACGGCGCTGCTGAAGAAGAAATCCGCCACCGAGCTTGGTGAGCTGGc  <  1:1837275/65‑1 (MQ=255) cgTGATGTGAATGAGAAAACGGCGCTGCTGAAGAAGAAATCCGCCACCGAGCTTGGTGAGCTGGc  <  1:1880437/65‑1 (MQ=255) cgTGATGTGAATGAGAAAACGGCGCTGCTGAAGAAGAAATCCGCCACCGAGCTTGGTGAGCTGGc  <  1:246837/65‑1 (MQ=255) cgTGATGTGAATGAGAAAACGGCGCTGCTGAAGAAGAAATCCGCCACCGAGCTTGGTGAGCTGGc  <  1:279926/65‑1 (MQ=255) cgTGATGTGAATGAGAAAACGGCGCTGCTGAAGAAGAAATCCGCCACCGAGCTTGGTGAGCTGGc  <  1:313969/65‑1 (MQ=255) cgTGATGTGAATGAGAAAACGGCGCTGCTGAAGAAGAAATCCGCCACCGAGCTTGGTGAGCTGGc  <  1:343349/65‑1 (MQ=255) cgTGATGTGAATGAGAAAACGGCGCTGCTGAAGAAGAAATCCGCCACCGAGCTTGGTGAGCTGGc  <  1:490643/65‑1 (MQ=255) cgTGATGTGAATGAGAAAACGGCGCTGCTGAAGAAGAAATCCGCCACCGAGCTTGGTGAGCTGGc  <  1:972823/65‑1 (MQ=255) cgTGATGTGAATGAGAAAACGGCGCTGCTGAAGAAGAAATCCGCCACCGAGCTTGGTGAGCTGGc  <  1:508033/65‑1 (MQ=255) cgTGATGTGAATGAGAAAACGGCGCTGCTGAAGAAGAAATCCGCCACCGAGCTTGGTGAGCTGGc  <  1:561725/65‑1 (MQ=255) cgTGATGTGAATGAGAAAACGGCGCTGCTGAAGAAGAAATCCGCCACCGAGCTTGGTGAGCTGGc  <  1:573430/65‑1 (MQ=255) cgTGATGTGAATGAGAAAACGGCGCTGCTGAAGAAGAAATCCGCCACCGAGCTTGGTGAGCTGGc  <  1:614971/65‑1 (MQ=255) cgTGATGTGAATGAGAAAACGGCGCTGCTGAAGAAGAAATCCGCCACCGAGCTTGGTGAGCTGGc  <  1:793903/65‑1 (MQ=255) cgTGATGTGAATGAGAAAACGGCGCTGCTGAAGAAGAAATCCGCCACCGAGCTTGGTGAGCTGGc  <  1:918909/65‑1 (MQ=255) cgTGATGTGAATGAGAAAACGGCGCTGCTGAAGAAGAAATCCGCCACCGAGCTTGGTGAGCTGGc  <  1:1647584/65‑1 (MQ=255) cgTGATGTGAATGAGAAAACGGCGCTGCTGAAGAAGAAATCCGCCACCGAGCTTGGTGAGCTGGc  <  1:104214/65‑1 (MQ=255) cgTGATGTGAATGAGAAAACGGCGCTGCTGAAGAAGAAATCCGCCACCGAGCTTGGTGAGCTGGc  <  1:1582393/65‑1 (MQ=255) cgTGATGTGAATGAGAAAACGGCGCTGCTGAAGAAGAAATCCGCCACCGAGCTTGGTGAGCTGGc  <  1:1084487/65‑1 (MQ=255) cgTGATGTGAATGAGAAAACGGCGCTGCTGAAGAAGAAATCCGCCACCGAGCTTGGTGAGCTGGc  <  1:14302/65‑1 (MQ=255) cgTGATGTGAATGAGAAAACGGCGCTGCTGAAGAAGAAATCCGCCACCGAGCTTGGTGAGCTGGc  <  1:1412659/65‑1 (MQ=255) cgTGATGTGAATGAGAAAACGGCGCTGCTGAAGAAGAAATCCGCCACCGAGCTTGGTGAGCTGGc  <  1:1757586/65‑1 (MQ=255) cgTGATGTGAATGAGAAAACGGCGCTGCTGAAGAAGAAATCCGCCACCGAGCTTGGTGAGCTGGc  <  1:1201651/65‑1 (MQ=255) cgTGATGTGAATGAGAAAACGGCGCTGCTGAAGAAGAAATCCGCCACCGAGCTTGGTGAGCTGGc  <  1:1240051/65‑1 (MQ=255)  gTGATGTGAATGAGAAAACGGCGCTGCTGAAGAAGAAATCCGCCACCGAGCTTGGTGAGCTGGc  <  1:1391642/64‑1 (MQ=255)  gTGATGTGAATGAGAAAACGGCGCTGCTGAAGAAGAAATCCGCCACCGAGCTTGGTGAGCTGGc  <  1:1023028/64‑1 (MQ=255)  gTGATGTGAATGAGAAAACGGCGCTGCTGAAGAAGAAATCCGCCACCGAGCTTGGTGAGCTGGc  <  1:934435/64‑1 (MQ=255)  gTGATGTGAATGAGAAAACGGCGCTGCTGAAGAAGAAATCCGCCACCGAGCTTGGTGAGCTGGc  <  1:741244/64‑1 (MQ=255)  gTGATGTGAATGAGAAAACGGCGCTGCTGAAGAAGAAATCCGCCACCGAGCTTGGTGAGCTGGc  <  1:705054/64‑1 (MQ=255)  gTGATGTGAATGAGAAAACGGCGCTGCTGAAGAAGAAATCCGCCACCGAGCTTGGTGAGCTGGc  <  1:1435303/64‑1 (MQ=255)  gTGATGTGAATGAGAAAACGGCGCTGCTGAAGAAGAAATCCGCCACCGAGCTTGGTGAGCTGGc  <  1:318514/64‑1 (MQ=255)  gTGATGTGAATGAGAAAACGGCGCTGCTGAAGAAGAAATCCGCCACCGAGCTTGGTGAGCTGGc  <  1:1511180/64‑1 (MQ=255)  gTGATGTGAATGAGAAAACGGCGCTGCTGAAGAAGAAATCCGCCACCGAGCTTGGTGAGCTGGc  <  1:1629940/64‑1 (MQ=255)  gTGATGTGAATGAGAAAACGGCGCTGCTGAAGAAGAAATCCGCCACCGAGCTTGGTGAGCTGGc  <  1:171277/64‑1 (MQ=255)  gTGATGTGAATGAGAAAACGGCGCTGCTGAAGAAGAAATCCGCCACCGAGCTTGGTGAGCTGGc  <  1:1862463/64‑1 (MQ=255)  gTGATGTGAATGAGAAAACGGCGCTGCTGAAGAAGAAATCAGCCACCGAGCTTGGTGAGCTGGc  <  1:5954/64‑1 (MQ=255)         gAATGAGAAAACGGCGCTGCTGAAGAAGAAATCCGCCACCGAGCTTGGTGAGCTGGc  <  1:709294/57‑1 (MQ=255)                     ggCGCTGCTGAAGAAGAAATCCGCCACCGAGCTTGGTGAGCTGGc  <  1:126389/45‑1 (MQ=255)                                                                 | CGTGATGTGAATGAGAAAACGGCGCTGCTGAAGAAGAAATCCGCCACCGAGCTTGGTGAGCTGGC  >  W3110S.gb/250225‑250289

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑