Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	3042185	3042228	44	79 [0]	[0] 135	yqfB	conserved hypothetical protein

CAATCGTGCAAAAATAACCGTCATCTTCAAAACGTCCGACACGAAGCACATCACCCGTTTTGAAG  >  W3110S.gb/3042120‑3042184                                                                 | cAATCGTGTAAAAATAACCGTCATCTTCAAAACGTCCGACACGAAGCACATCACCCGTTTTGAAg  >  1:1406342/1‑65 (MQ=255) cAATCGTGCAAGAATAACCGTCATCTTCAAAACGTCCGACACGAAGCACATCACCCGTTTTGAAg  >  1:305276/1‑65 (MQ=255) cAATCGTGCAAAAATAACCGTCATCTTCAAAACGTCCGACACGAAGCACATCACCCGTTTTGAAg  >  1:321032/1‑65 (MQ=255) cAATCGTGCAAAAATAACCGTCATCTTCAAAACGTCCGACACGAAGCACATCACCCGTTTTGAAg  >  1:553922/1‑65 (MQ=255) cAATCGTGCAAAAATAACCGTCATCTTCAAAACGTCCGACACGAAGCACATCACCCGTTTTGAAg  >  1:531293/1‑65 (MQ=255) cAATCGTGCAAAAATAACCGTCATCTTCAAAACGTCCGACACGAAGCACATCACCCGTTTTGAAg  >  1:52706/1‑65 (MQ=255) cAATCGTGCAAAAATAACCGTCATCTTCAAAACGTCCGACACGAAGCACATCACCCGTTTTGAAg  >  1:526437/1‑65 (MQ=255) cAATCGTGCAAAAATAACCGTCATCTTCAAAACGTCCGACACGAAGCACATCACCCGTTTTGAAg  >  1:490192/1‑65 (MQ=255) cAATCGTGCAAAAATAACCGTCATCTTCAAAACGTCCGACACGAAGCACATCACCCGTTTTGAAg  >  1:433520/1‑65 (MQ=255) cAATCGTGCAAAAATAACCGTCATCTTCAAAACGTCCGACACGAAGCACATCACCCGTTTTGAAg  >  1:428305/1‑65 (MQ=255) cAATCGTGCAAAAATAACCGTCATCTTCAAAACGTCCGACACGAAGCACATCACCCGTTTTGAAg  >  1:375570/1‑65 (MQ=255) cAATCGTGCAAAAATAACCGTCATCTTCAAAACGTCCGACACGAAGCACATCACCCGTTTTGAAg  >  1:3743/1‑65 (MQ=255) cAATCGTGCAAAAATAACCGTCATCTTCAAAACGTCCGACACGAAGCACATCACCCGTTTTGAAg  >  1:1778950/1‑65 (MQ=255) cAATCGTGCAAAAATAACCGTCATCTTCAAAACGTCCGACACGAAGCACATCACCCGTTTTGAAg  >  1:298700/1‑65 (MQ=255) cAATCGTGCAAAAATAACCGTCATCTTCAAAACGTCCGACACGAAGCACATCACCCGTTTTGAAg  >  1:278573/1‑65 (MQ=255) cAATCGTGCAAAAATAACCGTCATCTTCAAAACGTCCGACACGAAGCACATCACCCGTTTTGAAg  >  1:270058/1‑65 (MQ=255) cAATCGTGCAAAAATAACCGTCATCTTCAAAACGTCCGACACGAAGCACATCACCCGTTTTGAAg  >  1:207517/1‑65 (MQ=255) cAATCGTGCAAAAATAACCGTCATCTTCAAAACGTCCGACACGAAGCACATCACCCGTTTTGAAg  >  1:1878112/1‑65 (MQ=255) cAATCGTGCAAAAATAACCGTCATCTTCAAAACGTCCGACACGAAGCACATCACCCGTTTTGAAg  >  1:1863741/1‑65 (MQ=255) cAATCGTGCAAAAATAACCGTCATCTTCAAAACGTCCGACACGAAGCACATCACCCGTTTTGAAg  >  1:1796059/1‑65 (MQ=255) cAATCGTGCAAAAATAACCGTCATCTTCAAAACGTCCGACACGAAGCACATCACCCGTTTTGAAg  >  1:1677304/1‑65 (MQ=255) cAATCGTGCAAAAATAACCGTCATCTTCAAAACGTCCGACACGAAGCACATCACCCGTTTTGAAg  >  1:724971/1‑65 (MQ=255) cAATCGTGCAAAAATAACCGTCATCTTCAAAACGTCCGACACGAAGCACATCACCCGTTTTGAAg  >  1:997442/1‑65 (MQ=255) cAATCGTGCAAAAATAACCGTCATCTTCAAAACGTCCGACACGAAGCACATCACCCGTTTTGAAg  >  1:978460/1‑65 (MQ=255) cAATCGTGCAAAAATAACCGTCATCTTCAAAACGTCCGACACGAAGCACATCACCCGTTTTGAAg  >  1:911929/1‑65 (MQ=255) cAATCGTGCAAAAATAACCGTCATCTTCAAAACGTCCGACACGAAGCACATCACCCGTTTTGAAg  >  1:84386/1‑65 (MQ=255) cAATCGTGCAAAAATAACCGTCATCTTCAAAACGTCCGACACGAAGCACATCACCCGTTTTGAAg  >  1:83723/1‑65 (MQ=255) cAATCGTGCAAAAATAACCGTCATCTTCAAAACGTCCGACACGAAGCACATCACCCGTTTTGAAg  >  1:829034/1‑65 (MQ=255) cAATCGTGCAAAAATAACCGTCATCTTCAAAACGTCCGACACGAAGCACATCACCCGTTTTGAAg  >  1:815374/1‑65 (MQ=255) cAATCGTGCAAAAATAACCGTCATCTTCAAAACGTCCGACACGAAGCACATCACCCGTTTTGAAg  >  1:779956/1‑65 (MQ=255) cAATCGTGCAAAAATAACCGTCATCTTCAAAACGTCCGACACGAAGCACATCACCCGTTTTGAAg  >  1:736471/1‑65 (MQ=255) cAATCGTGCAAAAATAACCGTCATCTTCAAAACGTCCGACACGAAGCACATCACCCGTTTTGAAg  >  1:562657/1‑65 (MQ=255) cAATCGTGCAAAAATAACCGTCATCTTCAAAACGTCCGACACGAAGCACATCACCCGTTTTGAAg  >  1:699427/1‑65 (MQ=255) cAATCGTGCAAAAATAACCGTCATCTTCAAAACGTCCGACACGAAGCACATCACCCGTTTTGAAg  >  1:681284/1‑65 (MQ=255) cAATCGTGCAAAAATAACCGTCATCTTCAAAACGTCCGACACGAAGCACATCACCCGTTTTGAAg  >  1:646963/1‑65 (MQ=255) cAATCGTGCAAAAATAACCGTCATCTTCAAAACGTCCGACACGAAGCACATCACCCGTTTTGAAg  >  1:63241/1‑65 (MQ=255) cAATCGTGCAAAAATAACCGTCATCTTCAAAACGTCCGACACGAAGCACATCACCCGTTTTGAAg  >  1:589571/1‑65 (MQ=255) cAATCGTGCAAAAATAACCGTCATCTTCAAAACGTCCGACACGAAGCACATCACCCGTTTTGAAg  >  1:587377/1‑65 (MQ=255) cAATCGTGCAAAAATAACCGTCATCTTCAAAACGTCCGACACGAAGCACATCACCCGTTTTGAAg  >  1:58393/1‑65 (MQ=255) cAATCGTGCAAAAATAACCGTCATCTTCAAAACGTCCGACACGAAGCACATCACCCGTTTTGAAg  >  1:579950/1‑65 (MQ=255) cAATCGTGCAAAAATAACCGTCATCTTCAAAACGTCCGACACGAAGCACATCACCCGTTTTGAAg  >  1:1150949/1‑65 (MQ=255) cAATCGTGCAAAAATAACCGTCATCTTCAAAACGTCCGACACGAAGCACATCACCCGTTTTGAAg  >  1:1362953/1‑65 (MQ=255) cAATCGTGCAAAAATAACCGTCATCTTCAAAACGTCCGACACGAAGCACATCACCCGTTTTGAAg  >  1:1336090/1‑65 (MQ=255) cAATCGTGCAAAAATAACCGTCATCTTCAAAACGTCCGACACGAAGCACATCACCCGTTTTGAAg  >  1:1281099/1‑65 (MQ=255) cAATCGTGCAAAAATAACCGTCATCTTCAAAACGTCCGACACGAAGCACATCACCCGTTTTGAAg  >  1:1274707/1‑65 (MQ=255) cAATCGTGCAAAAATAACCGTCATCTTCAAAACGTCCGACACGAAGCACATCACCCGTTTTGAAg  >  1:1253915/1‑65 (MQ=255) cAATCGTGCAAAAATAACCGTCATCTTCAAAACGTCCGACACGAAGCACATCACCCGTTTTGAAg  >  1:122047/1‑65 (MQ=255) cAATCGTGCAAAAATAACCGTCATCTTCAAAACGTCCGACACGAAGCACATCACCCGTTTTGAAg  >  1:1220443/1‑65 (MQ=255) cAATCGTGCAAAAATAACCGTCATCTTCAAAACGTCCGACACGAAGCACATCACCCGTTTTGAAg  >  1:1176976/1‑65 (MQ=255) cAATCGTGCAAAAATAACCGTCATCTTCAAAACGTCCGACACGAAGCACATCACCCGTTTTGAAg  >  1:1165164/1‑65 (MQ=255) cAATCGTGCAAAAATAACCGTCATCTTCAAAACGTCCGACACGAAGCACATCACCCGTTTTGAAg  >  1:1420116/1‑65 (MQ=255) cAATCGTGCAAAAATAACCGTCATCTTCAAAACGTCCGACACGAAGCACATCACCCGTTTTGAAg  >  1:1147842/1‑65 (MQ=255) cAATCGTGCAAAAATAACCGTCATCTTCAAAACGTCCGACACGAAGCACATCACCCGTTTTGAAg  >  1:1128475/1‑65 (MQ=255) cAATCGTGCAAAAATAACCGTCATCTTCAAAACGTCCGACACGAAGCACATCACCCGTTTTGAAg  >  1:1126734/1‑65 (MQ=255) cAATCGTGCAAAAATAACCGTCATCTTCAAAACGTCCGACACGAAGCACATCACCCGTTTTGAAg  >  1:1124122/1‑65 (MQ=255) cAATCGTGCAAAAATAACCGTCATCTTCAAAACGTCCGACACGAAGCACATCACCCGTTTTGAAg  >  1:1120579/1‑65 (MQ=255) cAATCGTGCAAAAATAACCGTCATCTTCAAAACGTCCGACACGAAGCACATCACCCGTTTTGAAg  >  1:1106368/1‑65 (MQ=255) cAATCGTGCAAAAATAACCGTCATCTTCAAAACGTCCGACACGAAGCACATCACCCGTTTTGAAg  >  1:1089445/1‑65 (MQ=255) cAATCGTGCAAAAATAACCGTCATCTTCAAAACGTCCGACACGAAGCACATCACCCGTTTTGAAg  >  1:1075085/1‑65 (MQ=255) cAATCGTGCAAAAATAACCGTCATCTTCAAAACGTCCGACACGAAGCACATCACCCGTTTTGAAg  >  1:1036204/1‑65 (MQ=255) cAATCGTGCAAAAATAACCGTCATCTTCAAAACGTCCGACACGAAGCACATCACCCGTTTTGAAg  >  1:1556688/1‑65 (MQ=255) cAATCGTGCAAAAATAACCGTCATCTTCAAAACGTCCGACACGAAGCACATCACCCGTTTTGAAg  >  1:1010198/1‑65 (MQ=255) cAATCGTGCAAAAATAACCGTCATCTTCAAAACGTCCGACACGAAGCACATCACCCGTTTTGAAg  >  1:165878/1‑65 (MQ=255) cAATCGTGCAAAAATAACCGTCATCTTCAAAACGTCCGACACGAAGCACATCACCCGTTTTGAAg  >  1:1650555/1‑65 (MQ=255) cAATCGTGCAAAAATAACCGTCATCTTCAAAACGTCCGACACGAAGCACATCACCCGTTTTGAAg  >  1:1646866/1‑65 (MQ=255) cAATCGTGCAAAAATAACCGTCATCTTCAAAACGTCCGACACGAAGCACATCACCCGTTTTGAAg  >  1:1646456/1‑65 (MQ=255) cAATCGTGCAAAAATAACCGTCATCTTCAAAACGTCCGACACGAAGCACATCACCCGTTTTGAAg  >  1:1621516/1‑65 (MQ=255) cAATCGTGCAAAAATAACCGTCATCTTCAAAACGTCCGACACGAAGCACATCACCCGTTTTGAAg  >  1:1599041/1‑65 (MQ=255) cAATCGTGCAAAAATAACCGTCATCTTCAAAACGTCCGACACGAAGCACATCACCCGTTTTGAAg  >  1:1591501/1‑65 (MQ=255) cAATCGTGCAAAAATAACCGTCATCTTCAAAACGTCCGACACGAAGCACATCACCCGTTTTGAAg  >  1:1577221/1‑65 (MQ=255) cAATCGTGCAAAAATAACCGTCATCTTCAAAACGTCCGACACGAAGCACATCACCCGTTTTGAAg  >  1:1690367/1‑65 (MQ=255) cAATCGTGCAAAAATAACCGTCATCTTCAAAACGTCCGACACGAAGCACATCACCCGTTTTGAAg  >  1:1554158/1‑65 (MQ=255) cAATCGTGCAAAAATAACCGTCATCTTCAAAACGTCCGACACGAAGCACATCACCCGTTTTGAAg  >  1:1548901/1‑65 (MQ=255) cAATCGTGCAAAAATAACCGTCATCTTCAAAACGTCCGACACGAAGCACATCACCCGTTTTGAAg  >  1:1543695/1‑65 (MQ=255) cAATCGTGCAAAAATAACCGTCATCTTCAAAACGTCCGACACGAAGCACATCACCCGTTTTGAAg  >  1:1479864/1‑65 (MQ=255) cAATCGTGCAAAAATAACCGTCATCTTCAAAACGTCCGACACGAAGCACATCACCCGTTTTGAAg  >  1:1451069/1‑65 (MQ=255) cAATCGTGCAAAAATAACCGTCATCTTCAAAACGTCCGACACGAAGCACATCACCCGTTTTGAAg  >  1:1430161/1‑65 (MQ=255) cAATCGTGCAAAAATAACCGTCATCTTCAAAACGTCCGACACGAAGCACATCACCCGTTTTGAAg  >  1:1427660/1‑65 (MQ=255) cAATCGTGCAAAAATAACCGTCATCTTCAAAACGTCCGACACGAAGCACATCACCCGTTTTGAAg  >  1:1422358/1‑65 (MQ=255)                                                                 | CAATCGTGCAAAAATAACCGTCATCTTCAAAACGTCCGACACGAAGCACATCACCCGTTTTGAAG  >  W3110S.gb/3042120‑3042184

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑