Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	3066580	3066708	129	56 [0]	[0] 35	yggE	conserved hypothetical protein

GGAAATGTATTGTGCGACGCGCTCATCTGCCTGTTTCTTGGCAGTAGCGGCATCCTTCGCGGCCA  >  W3110S.gb/3066515‑3066579                                                                 | ggaaATGTATTGTGCGACGCGCTCATCTGCCTGTTTCTTGGCAGTAGCGGCATCCTTCGCGGCCa  <  1:571487/65‑1 (MQ=255) ggaaATGTATTGTGCGACGCGCTCATCTGCCTGTTTCTTGGCAGTAGCGGCATCCTTCGCGGCCa  <  1:1019700/65‑1 (MQ=255) ggaaATGTATTGTGCGACGCGCTCATCTGCCTGTTTCTTGGCAGTAGCGGCATCCTTCGCGGCCa  <  1:1825/65‑1 (MQ=255) ggaaATGTATTGTGCGACGCGCTCATCTGCCTGTTTCTTGGCAGTAGCGGCATCCTTCGCGGCCa  <  1:1852115/65‑1 (MQ=255) ggaaATGTATTGTGCGACGCGCTCATCTGCCTGTTTCTTGGCAGTAGCGGCATCCTTCGCGGCCa  <  1:1857649/65‑1 (MQ=255) ggaaATGTATTGTGCGACGCGCTCATCTGCCTGTTTCTTGGCAGTAGCGGCATCCTTCGCGGCCa  <  1:212158/65‑1 (MQ=255) ggaaATGTATTGTGCGACGCGCTCATCTGCCTGTTTCTTGGCAGTAGCGGCATCCTTCGCGGCCa  <  1:250332/65‑1 (MQ=255) ggaaATGTATTGTGCGACGCGCTCATCTGCCTGTTTCTTGGCAGTAGCGGCATCCTTCGCGGCCa  <  1:291955/65‑1 (MQ=255) ggaaATGTATTGTGCGACGCGCTCATCTGCCTGTTTCTTGGCAGTAGCGGCATCCTTCGCGGCCa  <  1:322953/65‑1 (MQ=255) ggaaATGTATTGTGCGACGCGCTCATCTGCCTGTTTCTTGGCAGTAGCGGCATCCTTCGCGGCCa  <  1:377650/65‑1 (MQ=255) ggaaATGTATTGTGCGACGCGCTCATCTGCCTGTTTCTTGGCAGTAGCGGCATCCTTCGCGGCCa  <  1:388794/65‑1 (MQ=255) ggaaATGTATTGTGCGACGCGCTCATCTGCCTGTTTCTTGGCAGTAGCGGCATCCTTCGCGGCCa  <  1:430704/65‑1 (MQ=255) ggaaATGTATTGTGCGACGCGCTCATCTGCCTGTTTCTTGGCAGTAGCGGCATCCTTCGCGGCCa  <  1:4700/65‑1 (MQ=255) ggaaATGTATTGTGCGACGCGCTCATCTGCCTGTTTCTTGGCAGTAGCGGCATCCTTCGCGGCCa  <  1:484236/65‑1 (MQ=255) ggaaATGTATTGTGCGACGCGCTCATCTGCCTGTTTCTTGGCAGTAGCGGCATCCTTCGCGGCCa  <  1:1822297/65‑1 (MQ=255) ggaaATGTATTGTGCGACGCGCTCATCTGCCTGTTTCTTGGCAGTAGCGGCATCCTTCGCGGCCa  <  1:643580/65‑1 (MQ=255) ggaaATGTATTGTGCGACGCGCTCATCTGCCTGTTTCTTGGCAGTAGCGGCATCCTTCGCGGCCa  <  1:710453/65‑1 (MQ=255) ggaaATGTATTGTGCGACGCGCTCATCTGCCTGTTTCTTGGCAGTAGCGGCATCCTTCGCGGCCa  <  1:733013/65‑1 (MQ=255) ggaaATGTATTGTGCGACGCGCTCATCTGCCTGTTTCTTGGCAGTAGCGGCATCCTTCGCGGCCa  <  1:740926/65‑1 (MQ=255) ggaaATGTATTGTGCGACGCGCTCATCTGCCTGTTTCTTGGCAGTAGCGGCATCCTTCGCGGCCa  <  1:746698/65‑1 (MQ=255) ggaaATGTATTGTGCGACGCGCTCATCTGCCTGTTTCTTGGCAGTAGCGGCATCCTTCGCGGCCa  <  1:747365/65‑1 (MQ=255) ggaaATGTATTGTGCGACGCGCTCATCTGCCTGTTTCTTGGCAGTAGCGGCATCCTTCGCGGCCa  <  1:789928/65‑1 (MQ=255) ggaaATGTATTGTGCGACGCGCTCATCTGCCTGTTTCTTGGCAGTAGCGGCATCCTTCGCGGCCa  <  1:81588/65‑1 (MQ=255) ggaaATGTATTGTGCGACGCGCTCATCTGCCTGTTTCTTGGCAGTAGCGGCATCCTTCGCGGCCa  <  1:89066/65‑1 (MQ=255) ggaaATGTATTGTGCGACGCGCTCATCTGCCTGTTTCTTGGCAGTAGCGGCATCCTTCGCGGCCa  <  1:895576/65‑1 (MQ=255) ggaaATGTATTGTGCGACGCGCTCATCTGCCTGTTTCTTGGCAGTAGCGGCATCCTTCGCGGCCa  <  1:909920/65‑1 (MQ=255) ggaaATGTATTGTGCGACGCGCTCATCTGCCTGTTTCTTGGCAGTAGCGGCATCCTTCGCGGCCa  <  1:967266/65‑1 (MQ=255) ggaaATGTATTGTGCGACGCGCTCATCTGCCTGTTTCTTGGCAGTAGCGGCATCCTTCGCGGCCa  <  1:1476444/65‑1 (MQ=255) ggaaATGTATTGTGCGACGCGCTCATCTGCCTGTTTCTTGGCAGTAGCGGCATCCTTCGCGGCCa  <  1:111584/65‑1 (MQ=255) ggaaATGTATTGTGCGACGCGCTCATCTGCCTGTTTCTTGGCAGTAGCGGCATCCTTCGCGGCCa  <  1:1157288/65‑1 (MQ=255) ggaaATGTATTGTGCGACGCGCTCATCTGCCTGTTTCTTGGCAGTAGCGGCATCCTTCGCGGCCa  <  1:1163151/65‑1 (MQ=255) ggaaATGTATTGTGCGACGCGCTCATCTGCCTGTTTCTTGGCAGTAGCGGCATCCTTCGCGGCCa  <  1:1171096/65‑1 (MQ=255) ggaaATGTATTGTGCGACGCGCTCATCTGCCTGTTTCTTGGCAGTAGCGGCATCCTTCGCGGCCa  <  1:1213228/65‑1 (MQ=255) ggaaATGTATTGTGCGACGCGCTCATCTGCCTGTTTCTTGGCAGTAGCGGCATCCTTCGCGGCCa  <  1:124011/65‑1 (MQ=255) ggaaATGTATTGTGCGACGCGCTCATCTGCCTGTTTCTTGGCAGTAGCGGCATCCTTCGCGGCCa  <  1:1250110/65‑1 (MQ=255) ggaaATGTATTGTGCGACGCGCTCATCTGCCTGTTTCTTGGCAGTAGCGGCATCCTTCGCGGCCa  <  1:1338167/65‑1 (MQ=255) ggaaATGTATTGTGCGACGCGCTCATCTGCCTGTTTCTTGGCAGTAGCGGCATCCTTCGCGGCCa  <  1:13522/65‑1 (MQ=255) ggaaATGTATTGTGCGACGCGCTCATCTGCCTGTTTCTTGGCAGTAGCGGCATCCTTCGCGGCCa  <  1:1354503/65‑1 (MQ=255) ggaaATGTATTGTGCGACGCGCTCATCTGCCTGTTTCTTGGCAGTAGCGGCATCCTTCGCGGCCa  <  1:1387572/65‑1 (MQ=255) ggaaATGTATTGTGCGACGCGCTCATCTGCCTGTTTCTTGGCAGTAGCGGCATCCTTCGCGGCCa  <  1:1431782/65‑1 (MQ=255) ggaaATGTATTGTGCGACGCGCTCATCTGCCTGTTTCTTGGCAGTAGCGGCATCCTTCGCGGCCa  <  1:1453039/65‑1 (MQ=255) ggaaATGTATTGTGCGACGCGCTCATCTGCCTGTTTCTTGGCAGTAGCGGCATCCTTCGCGGCCa  <  1:1742574/65‑1 (MQ=255) ggaaATGTATTGTGCGACGCGCTCATCTGCCTGTTTCTTGGCAGTAGCGGCATCCTTCGCGGCCa  <  1:1523545/65‑1 (MQ=255) ggaaATGTATTGTGCGACGCGCTCATCTGCCTGTTTCTTGGCAGTAGCGGCATCCTTCGCGGCCa  <  1:1556109/65‑1 (MQ=255) ggaaATGTATTGTGCGACGCGCTCATCTGCCTGTTTCTTGGCAGTAGCGGCATCCTTCGCGGCCa  <  1:1567054/65‑1 (MQ=255) ggaaATGTATTGTGCGACGCGCTCATCTGCCTGTTTCTTGGCAGTAGCGGCATCCTTCGCGGCCa  <  1:1584663/65‑1 (MQ=255) ggaaATGTATTGTGCGACGCGCTCATCTGCCTGTTTCTTGGCAGTAGCGGCATCCTTCGCGGCCa  <  1:1591253/65‑1 (MQ=255) ggaaATGTATTGTGCGACGCGCTCATCTGCCTGTTTCTTGGCAGTAGCGGCATCCTTCGCGGCCa  <  1:161229/65‑1 (MQ=255) ggaaATGTATTGTGCGACGCGCTCATCTGCCTGTTTCTTGGCAGTAGCGGCATCCTTCGCGGCCa  <  1:1646662/65‑1 (MQ=255) ggaaATGTATTGTGCGACGCGCTCATCTGCCTGTTTCTTGGCAGTAGCGGCATCCTTCGCGGCCa  <  1:1648556/65‑1 (MQ=255) ggaaATGTATTGTGCGACGCGCTCATCTGCCTGTTTCTTGGCAGTAGCGGCATCCTTCGCGGCCa  <  1:1660502/65‑1 (MQ=255) ggaaATGTATTGTGCGACGCGCTCATCTGCCTGTTTCTTGGCAGTAGCGGCATCCTTCGCGGCCa  <  1:1663805/65‑1 (MQ=255) ggaaATGTATTGTGCGACGCGCTCATCTGCCTGTTTCTTGGCAGTAGCGGCATCCTTCGCGGCCa  <  1:1671346/65‑1 (MQ=255) ggaaATGTATTGTGCGACGCGCTCATCTGCCTGTTTCTTGGCAGTAGCGGCATCCTTCGCGGCCa  <  1:172336/65‑1 (MQ=255) ggaaATGTATTGTGCGACGCGCTCATCTGCCTGTTTCTTGGCAGTAGCGGCATCCTTCCCGGCCa  <  1:267996/65‑1 (MQ=255)  gaaATGTATTGTGCGACGCGCTCATCTGCCTGTTTCTTGGCAGTAGCGGCATCCTTCGCGGCCa  <  1:959278/64‑1 (MQ=255)                                                                 | GGAAATGTATTGTGCGACGCGCTCATCTGCCTGTTTCTTGGCAGTAGCGGCATCCTTCGCGGCCA  >  W3110S.gb/3066515‑3066579

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑