Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	3173007	3173053	47	53 [0]	[0] 4	parE	DNA topoisomerase IV, subunit B

TCTCCGCCAGCAGTTCAGCCGCCTGAACGTTCTGGTTCAGCCACAGGATAAAGGCATCTTTCACC  >  W3110S.gb/3172942‑3173006                                                                 | tctcCGCCAGCAGTTCAGCCGCCTGAACGTTCTGGTTCAGCCACAGGATAAAGGCATCTTTcacc  >  1:644745/1‑65 (MQ=255) tctcCGCCAGCAGTTCAGCCGCCTGAACGTTCTGGTTCAGCCACAGGATAAAGGCATCTTTcacc  >  1:1009983/1‑65 (MQ=255) tctcCGCCAGCAGTTCAGCCGCCTGAACGTTCTGGTTCAGCCACAGGATAAAGGCATCTTTcacc  >  1:279002/1‑65 (MQ=255) tctcCGCCAGCAGTTCAGCCGCCTGAACGTTCTGGTTCAGCCACAGGATAAAGGCATCTTTcacc  >  1:305553/1‑65 (MQ=255) tctcCGCCAGCAGTTCAGCCGCCTGAACGTTCTGGTTCAGCCACAGGATAAAGGCATCTTTcacc  >  1:320832/1‑65 (MQ=255) tctcCGCCAGCAGTTCAGCCGCCTGAACGTTCTGGTTCAGCCACAGGATAAAGGCATCTTTcacc  >  1:379612/1‑65 (MQ=255) tctcCGCCAGCAGTTCAGCCGCCTGAACGTTCTGGTTCAGCCACAGGATAAAGGCATCTTTcacc  >  1:388936/1‑65 (MQ=255) tctcCGCCAGCAGTTCAGCCGCCTGAACGTTCTGGTTCAGCCACAGGATAAAGGCATCTTTcacc  >  1:411516/1‑65 (MQ=255) tctcCGCCAGCAGTTCAGCCGCCTGAACGTTCTGGTTCAGCCACAGGATAAAGGCATCTTTcacc  >  1:498687/1‑65 (MQ=255) tctcCGCCAGCAGTTCAGCCGCCTGAACGTTCTGGTTCAGCCACAGGATAAAGGCATCTTTcacc  >  1:51263/1‑65 (MQ=255) tctcCGCCAGCAGTTCAGCCGCCTGAACGTTCTGGTTCAGCCACAGGATAAAGGCATCTTTcacc  >  1:621531/1‑65 (MQ=255) tctcCGCCAGCAGTTCAGCCGCCTGAACGTTCTGGTTCAGCCACAGGATAAAGGCATCTTTcacc  >  1:625594/1‑65 (MQ=255) tctcCGCCAGCAGTTCAGCCGCCTGAACGTTCTGGTTCAGCCACAGGATAAAGGCATCTTTcacc  >  1:640751/1‑65 (MQ=255) tctcCGCCAGCAGTTCAGCCGCCTGAACGTTCTGGTTCAGCCACAGGATAAAGGCATCTTTcacc  >  1:260475/1‑65 (MQ=255) tctcCGCCAGCAGTTCAGCCGCCTGAACGTTCTGGTTCAGCCACAGGATAAAGGCATCTTTcacc  >  1:6963/1‑65 (MQ=255) tctcCGCCAGCAGTTCAGCCGCCTGAACGTTCTGGTTCAGCCACAGGATAAAGGCATCTTTcacc  >  1:825588/1‑65 (MQ=255) tctcCGCCAGCAGTTCAGCCGCCTGAACGTTCTGGTTCAGCCACAGGATAAAGGCATCTTTcacc  >  1:840984/1‑65 (MQ=255) tctcCGCCAGCAGTTCAGCCGCCTGAACGTTCTGGTTCAGCCACAGGATAAAGGCATCTTTcacc  >  1:87139/1‑65 (MQ=255) tctcCGCCAGCAGTTCAGCCGCCTGAACGTTCTGGTTCAGCCACAGGATAAAGGCATCTTTcacc  >  1:879664/1‑65 (MQ=255) tctcCGCCAGCAGTTCAGCCGCCTGAACGTTCTGGTTCAGCCACAGGATAAAGGCATCTTTcacc  >  1:883780/1‑65 (MQ=255) tctcCGCCAGCAGTTCAGCCGCCTGAACGTTCTGGTTCAGCCACAGGATAAAGGCATCTTTcacc  >  1:896630/1‑65 (MQ=255) tctcCGCCAGCAGTTCAGCCGCCTGAACGTTCTGGTTCAGCCACAGGATAAAGGCATCTTTcacc  >  1:898687/1‑65 (MQ=255) tctcCGCCAGCAGTTCAGCCGCCTGAACGTTCTGGTTCAGCCACAGGATAAAGGCATCTTTcacc  >  1:898784/1‑65 (MQ=255) tctcCGCCAGCAGTTCAGCCGCCTGAACGTTCTGGTTCAGCCACAGGATAAAGGCATCTTTcacc  >  1:929938/1‑65 (MQ=255) tctcCGCCAGCAGTTCAGCCGCCTGAACGTTCTGGTTCAGCCACAGGATAAAGGCATCTTTcacc  >  1:937535/1‑65 (MQ=255) tctcCGCCAGCAGTTCAGCCGCCTGAACGTTCTGGTTCAGCCACAGGATAAAGGCATCTTTcacc  >  1:950532/1‑65 (MQ=255) tctcCGCCAGCAGTTCAGCCGCCTGAACGTTCTGGTTCAGCCACAGGATAAAGGCATCTTTcacc  >  1:1569741/1‑65 (MQ=255) tctcCGCCAGCAGTTCAGCCGCCTGAACGTTCTGGTTCAGCCACAGGATAAAGGCATCTTTcacc  >  1:1030156/1‑65 (MQ=255) tctcCGCCAGCAGTTCAGCCGCCTGAACGTTCTGGTTCAGCCACAGGATAAAGGCATCTTTcacc  >  1:1057415/1‑65 (MQ=255) tctcCGCCAGCAGTTCAGCCGCCTGAACGTTCTGGTTCAGCCACAGGATAAAGGCATCTTTcacc  >  1:107518/1‑65 (MQ=255) tctcCGCCAGCAGTTCAGCCGCCTGAACGTTCTGGTTCAGCCACAGGATAAAGGCATCTTTcacc  >  1:1116514/1‑65 (MQ=255) tctcCGCCAGCAGTTCAGCCGCCTGAACGTTCTGGTTCAGCCACAGGATAAAGGCATCTTTcacc  >  1:1291961/1‑65 (MQ=255) tctcCGCCAGCAGTTCAGCCGCCTGAACGTTCTGGTTCAGCCACAGGATAAAGGCATCTTTcacc  >  1:1313602/1‑65 (MQ=255) tctcCGCCAGCAGTTCAGCCGCCTGAACGTTCTGGTTCAGCCACAGGATAAAGGCATCTTTcacc  >  1:1342641/1‑65 (MQ=255) tctcCGCCAGCAGTTCAGCCGCCTGAACGTTCTGGTTCAGCCACAGGATAAAGGCATCTTTcacc  >  1:1376032/1‑65 (MQ=255) tctcCGCCAGCAGTTCAGCCGCCTGAACGTTCTGGTTCAGCCACAGGATAAAGGCATCTTTcacc  >  1:1403088/1‑65 (MQ=255) tctcCGCCAGCAGTTCAGCCGCCTGAACGTTCTGGTTCAGCCACAGGATAAAGGCATCTTTcacc  >  1:1444939/1‑65 (MQ=255) tctcCGCCAGCAGTTCAGCCGCCTGAACGTTCTGGTTCAGCCACAGGATAAAGGCATCTTTcacc  >  1:1493233/1‑65 (MQ=255) tctcCGCCAGCAGTTCAGCCGCCTGAACGTTCTGGTTCAGCCACAGGATAAAGGCATCTTTcacc  >  1:1498597/1‑65 (MQ=255) tctcCGCCAGCAGTTCAGCCGCCTGAACGTTCTGGTTCAGCCACAGGATAAAGGCATCTTTcacc  >  1:1505519/1‑65 (MQ=255) tctcCGCCAGCAGTTCAGCCGCCTGAACGTTCTGGTTCAGCCACAGGATAAAGGCATCTTTcacc  >  1:221294/1‑65 (MQ=255) tctcCGCCAGCAGTTCAGCCGCCTGAACGTTCTGGTTCAGCCACAGGATAAAGGCATCTTTcacc  >  1:1574233/1‑65 (MQ=255) tctcCGCCAGCAGTTCAGCCGCCTGAACGTTCTGGTTCAGCCACAGGATAAAGGCATCTTTcacc  >  1:1624635/1‑65 (MQ=255) tctcCGCCAGCAGTTCAGCCGCCTGAACGTTCTGGTTCAGCCACAGGATAAAGGCATCTTTcacc  >  1:1639122/1‑65 (MQ=255) tctcCGCCAGCAGTTCAGCCGCCTGAACGTTCTGGTTCAGCCACAGGATAAAGGCATCTTTcacc  >  1:164931/1‑65 (MQ=255) tctcCGCCAGCAGTTCAGCCGCCTGAACGTTCTGGTTCAGCCACAGGATAAAGGCATCTTTcacc  >  1:1661555/1‑65 (MQ=255) tctcCGCCAGCAGTTCAGCCGCCTGAACGTTCTGGTTCAGCCACAGGATAAAGGCATCTTTcacc  >  1:1729297/1‑65 (MQ=255) tctcCGCCAGCAGTTCAGCCGCCTGAACGTTCTGGTTCAGCCACAGGATAAAGGCATCTTTcacc  >  1:1732282/1‑65 (MQ=255) tctcCGCCAGCAGTTCAGCCGCCTGAACGTTCTGGTTCAGCCACAGGATAAAGGCATCTTTcacc  >  1:1746525/1‑65 (MQ=255) tctcCGCCAGCAGTTCAGCCGCCTGAACGTTCTGGTTCAGCCACAGGATAAAGGCATCTTTcacc  >  1:1772884/1‑65 (MQ=255) tctcCGCCAGCAGTTCAGCCGCCTGAACGTTCTGGTTCAGCCACAGGATAAAGGCATCTTTcacc  >  1:1885134/1‑65 (MQ=255) tatcCGCCAGCAGTTCAGCCGCCTGAACGTTCTGGTTCAGCCACAGGATAAAGGCATCTTTcacc  >  1:490170/3‑65 (MQ=255) tatcCGCCAGCAGTTCAGCCGCCTGAACGTTCTGGTTCAGCCACAGGATAAAGGCATCTTTcacc  >  1:396892/3‑65 (MQ=255)                                                                 | TCTCCGCCAGCAGTTCAGCCGCCTGAACGTTCTGGTTCAGCCACAGGATAAAGGCATCTTTCACC  >  W3110S.gb/3172942‑3173006

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑