Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	295907	296213	307	47 [0]	[0] 15	intF	predicted phage integrase

CGTTTAGTTTTTGCACTGATACCGGTTCTCAATTCTTGAAGATAGTCTTCCCAGGCGACGGAGAA  >  W3110S.gb/295842‑295906                                                                 | cGTTTAGTTTTTGCACTGATACCGGTTCTCAATTCTTTAAGATAGTCTTACCAGGCGACGGAGaa  >  1:616877/1‑65 (MQ=255) cGTTTAGTTTTTGCACTGATACCGGTTCTCAATTCTTGAAGATAGTCTTCCCAGGCGCCGGAGaa  >  1:1347125/1‑65 (MQ=255) cGTTTAGTTTTTGCACTGATACCGGTTCTCAATTCTTGAAGATAGTCTTCCCAGGCGACGGAGaa  >  1:604770/1‑65 (MQ=255) cGTTTAGTTTTTGCACTGATACCGGTTCTCAATTCTTGAAGATAGTCTTCCCAGGCGACGGAGaa  >  1:1799142/1‑65 (MQ=255) cGTTTAGTTTTTGCACTGATACCGGTTCTCAATTCTTGAAGATAGTCTTCCCAGGCGACGGAGaa  >  1:1811771/1‑65 (MQ=255) cGTTTAGTTTTTGCACTGATACCGGTTCTCAATTCTTGAAGATAGTCTTCCCAGGCGACGGAGaa  >  1:1839429/1‑65 (MQ=255) cGTTTAGTTTTTGCACTGATACCGGTTCTCAATTCTTGAAGATAGTCTTCCCAGGCGACGGAGaa  >  1:29365/1‑65 (MQ=255) cGTTTAGTTTTTGCACTGATACCGGTTCTCAATTCTTGAAGATAGTCTTCCCAGGCGACGGAGaa  >  1:508400/1‑65 (MQ=255) cGTTTAGTTTTTGCACTGATACCGGTTCTCAATTCTTGAAGATAGTCTTCCCAGGCGACGGAGaa  >  1:549125/1‑65 (MQ=255) cGTTTAGTTTTTGCACTGATACCGGTTCTCAATTCTTGAAGATAGTCTTCCCAGGCGACGGAGaa  >  1:553677/1‑65 (MQ=255) cGTTTAGTTTTTGCACTGATACCGGTTCTCAATTCTTGAAGATAGTCTTCCCAGGCGACGGAGaa  >  1:558151/1‑65 (MQ=255) cGTTTAGTTTTTGCACTGATACCGGTTCTCAATTCTTGAAGATAGTCTTCCCAGGCGACGGAGaa  >  1:591612/1‑65 (MQ=255) cGTTTAGTTTTTGCACTGATACCGGTTCTCAATTCTTGAAGATAGTCTTCCCAGGCGACGGAGaa  >  1:595635/1‑65 (MQ=255) cGTTTAGTTTTTGCACTGATACCGGTTCTCAATTCTTGAAGATAGTCTTCCCAGGCGACGGAGaa  >  1:1761605/1‑65 (MQ=255) cGTTTAGTTTTTGCACTGATACCGGTTCTCAATTCTTGAAGATAGTCTTCCCAGGCGACGGAGaa  >  1:643609/1‑65 (MQ=255) cGTTTAGTTTTTGCACTGATACCGGTTCTCAATTCTTGAAGATAGTCTTCCCAGGCGACGGAGaa  >  1:725724/1‑65 (MQ=255) cGTTTAGTTTTTGCACTGATACCGGTTCTCAATTCTTGAAGATAGTCTTCCCAGGCGACGGAGaa  >  1:767807/1‑65 (MQ=255) cGTTTAGTTTTTGCACTGATACCGGTTCTCAATTCTTGAAGATAGTCTTCCCAGGCGACGGAGaa  >  1:805293/1‑65 (MQ=255) cGTTTAGTTTTTGCACTGATACCGGTTCTCAATTCTTGAAGATAGTCTTCCCAGGCGACGGAGaa  >  1:820815/1‑65 (MQ=255) cGTTTAGTTTTTGCACTGATACCGGTTCTCAATTCTTGAAGATAGTCTTCCCAGGCGACGGAGaa  >  1:833159/1‑65 (MQ=255) cGTTTAGTTTTTGCACTGATACCGGTTCTCAATTCTTGAAGATAGTCTTCCCAGGCGACGGAGaa  >  1:854443/1‑65 (MQ=255) cGTTTAGTTTTTGCACTGATACCGGTTCTCAATTCTTGAAGATAGTCTTCCCAGGCGACGGAGaa  >  1:892921/1‑65 (MQ=255) cGTTTAGTTTTTGCACTGATACCGGTTCTCAATTCTTGAAGATAGTCTTCCCAGGCGACGGAGaa  >  1:975608/1‑65 (MQ=255) cGTTTAGTTTTTGCACTGATACCGGTTCTCAATTCTTGAAGATAGTCTTCCCAGGCGACGGAGaa  >  1:1229395/1‑65 (MQ=255) cGTTTAGTTTTTGCACTGATACCGGTTCTCAATTCTTGAAGATAGTCTTCCCAGGCGACGGAGaa  >  1:1012800/1‑65 (MQ=255) cGTTTAGTTTTTGCACTGATACCGGTTCTCAATTCTTGAAGATAGTCTTCCCAGGCGACGGAGaa  >  1:1020914/1‑65 (MQ=255) cGTTTAGTTTTTGCACTGATACCGGTTCTCAATTCTTGAAGATAGTCTTCCCAGGCGACGGAGaa  >  1:1031809/1‑65 (MQ=255) cGTTTAGTTTTTGCACTGATACCGGTTCTCAATTCTTGAAGATAGTCTTCCCAGGCGACGGAGaa  >  1:1072729/1‑65 (MQ=255) cGTTTAGTTTTTGCACTGATACCGGTTCTCAATTCTTGAAGATAGTCTTCCCAGGCGACGGAGaa  >  1:1094418/1‑65 (MQ=255) cGTTTAGTTTTTGCACTGATACCGGTTCTCAATTCTTGAAGATAGTCTTCCCAGGCGACGGAGaa  >  1:1095450/1‑65 (MQ=255) cGTTTAGTTTTTGCACTGATACCGGTTCTCAATTCTTGAAGATAGTCTTCCCAGGCGACGGAGaa  >  1:1168579/1‑65 (MQ=255) cGTTTAGTTTTTGCACTGATACCGGTTCTCAATTCTTGAAGATAGTCTTCCCAGGCGACGGAGaa  >  1:1196983/1‑65 (MQ=255) cGTTTAGTTTTTGCACTGATACCGGTTCTCAATTCTTGAAGATAGTCTTCCCAGGCGACGGAGaa  >  1:121245/1‑65 (MQ=255) cGTTTAGTTTTTGCACTGATACCGGTTCTCAATTCTTGAAGATAGTCTTCCCAGGCGACGGAGaa  >  1:1012445/1‑65 (MQ=255) cGTTTAGTTTTTGCACTGATACCGGTTCTCAATTCTTGAAGATAGTCTTCCCAGGCGACGGAGaa  >  1:1247772/1‑65 (MQ=255) cGTTTAGTTTTTGCACTGATACCGGTTCTCAATTCTTGAAGATAGTCTTCCCAGGCGACGGAGaa  >  1:1375677/1‑65 (MQ=255) cGTTTAGTTTTTGCACTGATACCGGTTCTCAATTCTTGAAGATAGTCTTCCCAGGCGACGGAGaa  >  1:1438977/1‑65 (MQ=255) cGTTTAGTTTTTGCACTGATACCGGTTCTCAATTCTTGAAGATAGTCTTCCCAGGCGACGGAGaa  >  1:1460794/1‑65 (MQ=255) cGTTTAGTTTTTGCACTGATACCGGTTCTCAATTCTTGAAGATAGTCTTCCCAGGCGACGGAGaa  >  1:1465678/1‑65 (MQ=255) cGTTTAGTTTTTGCACTGATACCGGTTCTCAATTCTTGAAGATAGTCTTCCCAGGCGACGGAGaa  >  1:1490777/1‑65 (MQ=255) cGTTTAGTTTTTGCACTGATACCGGTTCTCAATTCTTGAAGATAGTCTTCCCAGGCGACGGAGaa  >  1:1533214/1‑65 (MQ=255) cGTTTAGTTTTTGCACTGATACCGGTTCTCAATTCTTGAAGATAGTCTTCCCAGGCGACGGAGaa  >  1:1572853/1‑65 (MQ=255) cGTTTAGTTTTTGCACTGATACCGGTTCTCAATTCTTGAAGATAGTCTTCCCAGGCGACGGAGaa  >  1:1654999/1‑65 (MQ=255) cGTTTAGTTTTTGCACTGATACCGGTTCTCAATTCTTGAAGATAGTCTTCCCAGGCGACGGAGaa  >  1:1703546/1‑65 (MQ=255) cGTTTAGTTTTTGCACTGATACCGGTTCTCAATTATTGAAGATAGTCTTCCCAGGCGACGGAGaa  >  1:742347/1‑65 (MQ=255) cGTTTAGTTTTTGCACTGATACCCGTTCTCAATTCTTGAAGATAGTCTTCCCAGGGGACGGAGaa  >  1:567075/1‑65 (MQ=255) cGTTTAGTTTTTGCACTGATAACGGTTCTCAATTCTTGAAGATAGTATTCCCAGGCGACGGAGaa  >  1:1151646/1‑65 (MQ=255)                                                                 | CGTTTAGTTTTTGCACTGATACCGGTTCTCAATTCTTGAAGATAGTCTTCCCAGGCGACGGAGAA  >  W3110S.gb/295842‑295906

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑