Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	3495783	3495889	107	64 [0]	[0] 27	ptsA	fused predicted PTS enzymes Hpr component, enzyme I component, and enzyme IIA component

CGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGACGCAGCATT  >  W3110S.gb/3495718‑3495782                                                                 | cgagCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGACGCAGCatt  >  1:3548/4‑65 (MQ=255) cgagCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGACGCAGCatt  >  1:3770/4‑65 (MQ=255) cGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGTGCTGGAATCCGCCAACGGACGCAGCatt  >  1:1055779/1‑65 (MQ=255) cGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGTGCTGGAATCCGCCAACGGACGCAGCatt  >  1:1058069/1‑65 (MQ=255) cGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGACGCAGCatt  >  1:485308/1‑65 (MQ=255) cGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGACGCAGCatt  >  1:208258/1‑65 (MQ=255) cGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGACGCAGCatt  >  1:473633/1‑65 (MQ=255) cGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGACGCAGCatt  >  1:464638/1‑65 (MQ=255) cGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGACGCAGCatt  >  1:434953/1‑65 (MQ=255) cGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGACGCAGCatt  >  1:423391/1‑65 (MQ=255) cGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGACGCAGCatt  >  1:417912/1‑65 (MQ=255) cGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGACGCAGCatt  >  1:389547/1‑65 (MQ=255) cGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGACGCAGCatt  >  1:387486/1‑65 (MQ=255) cGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGACGCAGCatt  >  1:379342/1‑65 (MQ=255) cGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGACGCAGCatt  >  1:349184/1‑65 (MQ=255) cGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGACGCAGCatt  >  1:271738/1‑65 (MQ=255) cGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGACGCAGCatt  >  1:263088/1‑65 (MQ=255) cGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGACGCAGCatt  >  1:982243/1‑65 (MQ=255) cGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGACGCAGCatt  >  1:513821/1‑65 (MQ=255) cGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGACGCAGCatt  >  1:537810/1‑65 (MQ=255) cGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGACGCAGCatt  >  1:553752/1‑65 (MQ=255) cGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGACGCAGCatt  >  1:581262/1‑65 (MQ=255) cGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGACGCAGCatt  >  1:603619/1‑65 (MQ=255) cGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGACGCAGCatt  >  1:632272/1‑65 (MQ=255) cGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGACGCAGCatt  >  1:747412/1‑65 (MQ=255) cGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGACGCAGCatt  >  1:754298/1‑65 (MQ=255) cGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGACGCAGCatt  >  1:77460/1‑65 (MQ=255) cGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGACGCAGCatt  >  1:849464/1‑65 (MQ=255) cGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGACGCAGCatt  >  1:864305/1‑65 (MQ=255) cGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGACGCAGCatt  >  1:872272/1‑65 (MQ=255) cGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGACGCAGCatt  >  1:925766/1‑65 (MQ=255) cGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGACGCAGCatt  >  1:929674/1‑65 (MQ=255) cGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGACGCAGCatt  >  1:1037525/1‑65 (MQ=255) cGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGACGCAGCatt  >  1:146149/1‑65 (MQ=255) cGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGACGCAGCatt  >  1:1131347/1‑65 (MQ=255) cGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGACGCAGCatt  >  1:1157135/1‑65 (MQ=255) cGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGACGCAGCatt  >  1:1160841/1‑65 (MQ=255) cGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGACGCAGCatt  >  1:116886/1‑65 (MQ=255) cGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGACGCAGCatt  >  1:1206122/1‑65 (MQ=255) cGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGACGCAGCatt  >  1:1217099/1‑65 (MQ=255) cGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGACGCAGCatt  >  1:1241390/1‑65 (MQ=255) cGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGACGCAGCatt  >  1:127864/1‑65 (MQ=255) cGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGACGCAGCatt  >  1:1289494/1‑65 (MQ=255) cGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGACGCAGCatt  >  1:1317406/1‑65 (MQ=255) cGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGACGCAGCatt  >  1:1323924/1‑65 (MQ=255) cGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGACGCAGCatt  >  1:1339678/1‑65 (MQ=255) cGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGACGCAGCatt  >  1:1341159/1‑65 (MQ=255) cGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGACGCAGCatt  >  1:135801/1‑65 (MQ=255) cGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGACGCAGCatt  >  1:1452940/1‑65 (MQ=255) cGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGACGCAGCatt  >  1:1867021/1‑65 (MQ=255) cGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGACGCAGCatt  >  1:1511632/1‑65 (MQ=255) cGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGACGCAGCatt  >  1:1539856/1‑65 (MQ=255) cGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGACGCAGCatt  >  1:1572250/1‑65 (MQ=255) cGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGACGCAGCatt  >  1:1595316/1‑65 (MQ=255) cGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGACGCAGCatt  >  1:1640794/1‑65 (MQ=255) cGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGACGCAGCatt  >  1:1655860/1‑65 (MQ=255) cGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGACGCAGCatt  >  1:1685519/1‑65 (MQ=255) cGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGACGCAGCatt  >  1:1718169/1‑65 (MQ=255) cGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGACGCAGCatt  >  1:1729374/1‑65 (MQ=255) cGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGACGCAGCatt  >  1:1749369/1‑65 (MQ=255) cGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGACGCAGCatt  >  1:1767447/1‑65 (MQ=255) cGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGACGCAGCatt  >  1:1768093/1‑65 (MQ=255) cGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGACGCAGCatt  >  1:1807931/1‑65 (MQ=255) cGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGACGCAGCatt  >  1:1859731/1‑65 (MQ=255)                                                                 | CGGGCGAAAGCGAGTTGTACAACATTTTTTGTCAGGCGCTGGAATCCGCCAACGGACGCAGCATT  >  W3110S.gb/3495718‑3495782

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑