Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	3618617	3618620	4	69 [0]	[0] 51	rmuC	predicted recombination limiting protein

CGTTCATAGGCGACCAGCGTCATTTTGGCGTCGATCACCACATCTTTTCCCTGCGGCAGGCGCAC  >  W3110S.gb/3618552‑3618616                                                                 | cgatCATAGGCGACCAGCGTCATTTTGGCGTCGATCACCACATCTTTTCCCTGCGGCAGGCGCAc  >  1:240253/4‑65 (MQ=255) cGTTCATAGGCGACCAGCGTCATTTTGGCGTCGATCACCACATCTTTTCCCTGCGGCTGGCGCAc  >  1:1338018/1‑65 (MQ=255) cGTTCATAGGCGACCAGCGTCATTTTGGCGTCGATCACCACATCTTTTCCCTGCGGCAGGCGCAc  >  1:419467/1‑65 (MQ=255) cGTTCATAGGCGACCAGCGTCATTTTGGCGTCGATCACCACATCTTTTCCCTGCGGCAGGCGCAc  >  1:466574/1‑65 (MQ=255) cGTTCATAGGCGACCAGCGTCATTTTGGCGTCGATCACCACATCTTTTCCCTGCGGCAGGCGCAc  >  1:404963/1‑65 (MQ=255) cGTTCATAGGCGACCAGCGTCATTTTGGCGTCGATCACCACATCTTTTCCCTGCGGCAGGCGCAc  >  1:387652/1‑65 (MQ=255) cGTTCATAGGCGACCAGCGTCATTTTGGCGTCGATCACCACATCTTTTCCCTGCGGCAGGCGCAc  >  1:367667/1‑65 (MQ=255) cGTTCATAGGCGACCAGCGTCATTTTGGCGTCGATCACCACATCTTTTCCCTGCGGCAGGCGCAc  >  1:296065/1‑65 (MQ=255) cGTTCATAGGCGACCAGCGTCATTTTGGCGTCGATCACCACATCTTTTCCCTGCGGCAGGCGCAc  >  1:294606/1‑65 (MQ=255) cGTTCATAGGCGACCAGCGTCATTTTGGCGTCGATCACCACATCTTTTCCCTGCGGCAGGCGCAc  >  1:256408/1‑65 (MQ=255) cGTTCATAGGCGACCAGCGTCATTTTGGCGTCGATCACCACATCTTTTCCCTGCGGCAGGCGCAc  >  1:212262/1‑65 (MQ=255) cGTTCATAGGCGACCAGCGTCATTTTGGCGTCGATCACCACATCTTTTCCCTGCGGCAGGCGCAc  >  1:20683/1‑65 (MQ=255) cGTTCATAGGCGACCAGCGTCATTTTGGCGTCGATCACCACATCTTTTCCCTGCGGCAGGCGCAc  >  1:19580/1‑65 (MQ=255) cGTTCATAGGCGACCAGCGTCATTTTGGCGTCGATCACCACATCTTTTCCCTGCGGCAGGCGCAc  >  1:1881196/1‑65 (MQ=255) cGTTCATAGGCGACCAGCGTCATTTTGGCGTCGATCACCACATCTTTTCCCTGCGGCAGGCGCAc  >  1:1855460/1‑65 (MQ=255) cGTTCATAGGCGACCAGCGTCATTTTGGCGTCGATCACCACATCTTTTCCCTGCGGCAGGCGCAc  >  1:1850282/1‑65 (MQ=255) cGTTCATAGGCGACCAGCGTCATTTTGGCGTCGATCACCACATCTTTTCCCTGCGGCAGGCGCAc  >  1:1846443/1‑65 (MQ=255) cGTTCATAGGCGACCAGCGTCATTTTGGCGTCGATCACCACATCTTTTCCCTGCGGCAGGCGCAc  >  1:1832366/1‑65 (MQ=255) cGTTCATAGGCGACCAGCGTCATTTTGGCGTCGATCACCACATCTTTTCCCTGCGGCAGGCGCAc  >  1:723024/1‑65 (MQ=255) cGTTCATAGGCGACCAGCGTCATTTTGGCGTCGATCACCACATCTTTTCCCTGCGGCAGGCGCAc  >  1:965243/1‑65 (MQ=255) cGTTCATAGGCGACCAGCGTCATTTTGGCGTCGATCACCACATCTTTTCCCTGCGGCAGGCGCAc  >  1:942384/1‑65 (MQ=255) cGTTCATAGGCGACCAGCGTCATTTTGGCGTCGATCACCACATCTTTTCCCTGCGGCAGGCGCAc  >  1:906479/1‑65 (MQ=255) cGTTCATAGGCGACCAGCGTCATTTTGGCGTCGATCACCACATCTTTTCCCTGCGGCAGGCGCAc  >  1:903751/1‑65 (MQ=255) cGTTCATAGGCGACCAGCGTCATTTTGGCGTCGATCACCACATCTTTTCCCTGCGGCAGGCGCAc  >  1:903734/1‑65 (MQ=255) cGTTCATAGGCGACCAGCGTCATTTTGGCGTCGATCACCACATCTTTTCCCTGCGGCAGGCGCAc  >  1:895233/1‑65 (MQ=255) cGTTCATAGGCGACCAGCGTCATTTTGGCGTCGATCACCACATCTTTTCCCTGCGGCAGGCGCAc  >  1:879783/1‑65 (MQ=255) cGTTCATAGGCGACCAGCGTCATTTTGGCGTCGATCACCACATCTTTTCCCTGCGGCAGGCGCAc  >  1:751208/1‑65 (MQ=255) cGTTCATAGGCGACCAGCGTCATTTTGGCGTCGATCACCACATCTTTTCCCTGCGGCAGGCGCAc  >  1:442632/1‑65 (MQ=255) cGTTCATAGGCGACCAGCGTCATTTTGGCGTCGATCACCACATCTTTTCCCTGCGGCAGGCGCAc  >  1:714294/1‑65 (MQ=255) cGTTCATAGGCGACCAGCGTCATTTTGGCGTCGATCACCACATCTTTTCCCTGCGGCAGGCGCAc  >  1:66149/1‑65 (MQ=255) cGTTCATAGGCGACCAGCGTCATTTTGGCGTCGATCACCACATCTTTTCCCTGCGGCAGGCGCAc  >  1:653281/1‑65 (MQ=255) cGTTCATAGGCGACCAGCGTCATTTTGGCGTCGATCACCACATCTTTTCCCTGCGGCAGGCGCAc  >  1:647431/1‑65 (MQ=255) cGTTCATAGGCGACCAGCGTCATTTTGGCGTCGATCACCACATCTTTTCCCTGCGGCAGGCGCAc  >  1:607600/1‑65 (MQ=255) cGTTCATAGGCGACCAGCGTCATTTTGGCGTCGATCACCACATCTTTTCCCTGCGGCAGGCGCAc  >  1:482766/1‑65 (MQ=255) cGTTCATAGGCGACCAGCGTCATTTTGGCGTCGATCACCACATCTTTTCCCTGCGGCAGGCGCAc  >  1:1785208/1‑65 (MQ=255) cGTTCATAGGCGACCAGCGTCATTTTGGCGTCGATCACCACATCTTTTCCCTGCGGCAGGCGCAc  >  1:1247361/1‑65 (MQ=255) cGTTCATAGGCGACCAGCGTCATTTTGGCGTCGATCACCACATCTTTTCCCTGCGGCAGGCGCAc  >  1:1480717/1‑65 (MQ=255) cGTTCATAGGCGACCAGCGTCATTTTGGCGTCGATCACCACATCTTTTCCCTGCGGCAGGCGCAc  >  1:1355593/1‑65 (MQ=255) cGTTCATAGGCGACCAGCGTCATTTTGGCGTCGATCACCACATCTTTTCCCTGCGGCAGGCGCAc  >  1:1335438/1‑65 (MQ=255) cGTTCATAGGCGACCAGCGTCATTTTGGCGTCGATCACCACATCTTTTCCCTGCGGCAGGCGCAc  >  1:1313914/1‑65 (MQ=255) cGTTCATAGGCGACCAGCGTCATTTTGGCGTCGATCACCACATCTTTTCCCTGCGGCAGGCGCAc  >  1:1304831/1‑65 (MQ=255) cGTTCATAGGCGACCAGCGTCATTTTGGCGTCGATCACCACATCTTTTCCCTGCGGCAGGCGCAc  >  1:1275812/1‑65 (MQ=255) cGTTCATAGGCGACCAGCGTCATTTTGGCGTCGATCACCACATCTTTTCCCTGCGGCAGGCGCAc  >  1:1257034/1‑65 (MQ=255) cGTTCATAGGCGACCAGCGTCATTTTGGCGTCGATCACCACATCTTTTCCCTGCGGCAGGCGCAc  >  1:1250368/1‑65 (MQ=255) cGTTCATAGGCGACCAGCGTCATTTTGGCGTCGATCACCACATCTTTTCCCTGCGGCAGGCGCAc  >  1:1499155/1‑65 (MQ=255) cGTTCATAGGCGACCAGCGTCATTTTGGCGTCGATCACCACATCTTTTCCCTGCGGCAGGCGCAc  >  1:1241787/1‑65 (MQ=255) cGTTCATAGGCGACCAGCGTCATTTTGGCGTCGATCACCACATCTTTTCCCTGCGGCAGGCGCAc  >  1:1200220/1‑65 (MQ=255) cGTTCATAGGCGACCAGCGTCATTTTGGCGTCGATCACCACATCTTTTCCCTGCGGCAGGCGCAc  >  1:118481/1‑65 (MQ=255) cGTTCATAGGCGACCAGCGTCATTTTGGCGTCGATCACCACATCTTTTCCCTGCGGCAGGCGCAc  >  1:1141799/1‑65 (MQ=255) cGTTCATAGGCGACCAGCGTCATTTTGGCGTCGATCACCACATCTTTTCCCTGCGGCAGGCGCAc  >  1:112503/1‑65 (MQ=255) cGTTCATAGGCGACCAGCGTCATTTTGGCGTCGATCACCACATCTTTTCCCTGCGGCAGGCGCAc  >  1:110379/1‑65 (MQ=255) cGTTCATAGGCGACCAGCGTCATTTTGGCGTCGATCACCACATCTTTTCCCTGCGGCAGGCGCAc  >  1:1084846/1‑65 (MQ=255) cGTTCATAGGCGACCAGCGTCATTTTGGCGTCGATCACCACATCTTTTCCCTGCGGCAGGCGCAc  >  1:1590032/1‑65 (MQ=255) cGTTCATAGGCGACCAGCGTCATTTTGGCGTCGATCACCACATCTTTTCCCTGCGGCAGGCGCAc  >  1:1024916/1‑65 (MQ=255) cGTTCATAGGCGACCAGCGTCATTTTGGCGTCGATCACCACATCTTTTCCCTGCGGCAGGCGCAc  >  1:1777455/1‑65 (MQ=255) cGTTCATAGGCGACCAGCGTCATTTTGGCGTCGATCACCACATCTTTTCCCTGCGGCAGGCGCAc  >  1:1757145/1‑65 (MQ=255) cGTTCATAGGCGACCAGCGTCATTTTGGCGTCGATCACCACATCTTTTCCCTGCGGCAGGCGCAc  >  1:1724550/1‑65 (MQ=255) cGTTCATAGGCGACCAGCGTCATTTTGGCGTCGATCACCACATCTTTTCCCTGCGGCAGGCGCAc  >  1:1695500/1‑65 (MQ=255) cGTTCATAGGCGACCAGCGTCATTTTGGCGTCGATCACCACATCTTTTCCCTGCGGCAGGCGCAc  >  1:1651100/1‑65 (MQ=255) cGTTCATAGGCGACCAGCGTCATTTTGGCGTCGATCACCACATCTTTTCCCTGCGGCAGGCGCAc  >  1:1646517/1‑65 (MQ=255) cGTTCATAGGCGACCAGCGTCATTTTGGCGTCGATCACCACATCTTTTCCCTGCGGCAGGCGCAc  >  1:1612724/1‑65 (MQ=255) cGTTCATAGGCGACCAGCGTCATTTTGGCGTCGATCACCACATCTTTTCCCTGCGGCAGGCGCAc  >  1:1809064/1‑65 (MQ=255) cGTTCATAGGCGACCAGCGTCATTTTGGCGTCGATCACCACATCTTTTCCCTGCGGCAGGCGCAc  >  1:1584438/1‑65 (MQ=255) cGTTCATAGGCGACCAGCGTCATTTTGGCGTCGATCACCACATCTTTTCCCTGCGGCAGGCGCAc  >  1:1580244/1‑65 (MQ=255) cGTTCATAGGCGACCAGCGTCATTTTGGCGTCGATCACCACATCTTTTCCCTGCGGCAGGCGCAc  >  1:1578372/1‑65 (MQ=255) cGTTCATAGGCGACCAGCGTCATTTTGGCGTCGATCACCACATCTTTTCCCTGCGGCAGGCGCAc  >  1:1557265/1‑65 (MQ=255) cGTTCATAGGCGACCAGCGTCATTTTGGCGTCGATCACCACATCTTTTCCCTGCGGCAGGCGCAc  >  1:1502904/1‑65 (MQ=255) cGTTCATAGGCGACCAGCGTCATTTTGGCGTCGATCACCACATCTTTTCCCTGCGGCAGGCGCAc  >  1:1501396/1‑65 (MQ=255) cGTTCATAGGCGACCAGCGTCATATTGGCGTCGATCACCACATCTTTTCCCTGCGGCAGGCGCAc  >  1:151197/1‑65 (MQ=255)                                                                 | CGTTCATAGGCGACCAGCGTCATTTTGGCGTCGATCACCACATCTTTTCCCTGCGGCAGGCGCAC  >  W3110S.gb/3618552‑3618616

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑