Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	3618686	3619107	422	59 [0]	[0] 11	rmuC	predicted recombination limiting protein

ACATCCGGCTGCATCCGCGAGCGGGCGTCATTTTCGATGCTGACCTGGGTTTCATATTCATACCC  >  W3110S.gb/3618621‑3618685                                                                 | aCATCTGGCTGCATCCGCGAGCGGGCGTCATTTTCGATGCTGACCTGGGTTTCATATTCATAccc  <  1:685811/65‑1 (MQ=255) aCATCCGGCTGCATCCGCGAGCGGGCGTCATTTTCGATGCTGACCTGGGTTTCATATTCATTccc  <  1:192478/65‑1 (MQ=255) aCATCCGGCTGCATCCGCGAGCGGGCGTCATTTTCGATGCTGACCTGGGTTTCATATTCATAccc  <  1:385331/65‑1 (MQ=255) aCATCCGGCTGCATCCGCGAGCGGGCGTCATTTTCGATGCTGACCTGGGTTTCATATTCATAccc  <  1:1659382/65‑1 (MQ=255) aCATCCGGCTGCATCCGCGAGCGGGCGTCATTTTCGATGCTGACCTGGGTTTCATATTCATAccc  <  1:1674160/65‑1 (MQ=255) aCATCCGGCTGCATCCGCGAGCGGGCGTCATTTTCGATGCTGACCTGGGTTTCATATTCATAccc  <  1:172412/65‑1 (MQ=255) aCATCCGGCTGCATCCGCGAGCGGGCGTCATTTTCGATGCTGACCTGGGTTTCATATTCATAccc  <  1:174150/65‑1 (MQ=255) aCATCCGGCTGCATCCGCGAGCGGGCGTCATTTTCGATGCTGACCTGGGTTTCATATTCATAccc  <  1:1798539/65‑1 (MQ=255) aCATCCGGCTGCATCCGCGAGCGGGCGTCATTTTCGATGCTGACCTGGGTTTCATATTCATAccc  <  1:1835480/65‑1 (MQ=255) aCATCCGGCTGCATCCGCGAGCGGGCGTCATTTTCGATGCTGACCTGGGTTTCATATTCATAccc  <  1:244348/65‑1 (MQ=255) aCATCCGGCTGCATCCGCGAGCGGGCGTCATTTTCGATGCTGACCTGGGTTTCATATTCATAccc  <  1:247789/65‑1 (MQ=255) aCATCCGGCTGCATCCGCGAGCGGGCGTCATTTTCGATGCTGACCTGGGTTTCATATTCATAccc  <  1:294992/65‑1 (MQ=255) aCATCCGGCTGCATCCGCGAGCGGGCGTCATTTTCGATGCTGACCTGGGTTTCATATTCATAccc  <  1:380148/65‑1 (MQ=255) aCATCCGGCTGCATCCGCGAGCGGGCGTCATTTTCGATGCTGACCTGGGTTTCATATTCATAccc  <  1:384847/65‑1 (MQ=255) aCATCCGGCTGCATCCGCGAGCGGGCGTCATTTTCGATGCTGACCTGGGTTTCATATTCATAccc  <  1:1057458/65‑1 (MQ=255) aCATCCGGCTGCATCCGCGAGCGGGCGTCATTTTCGATGCTGACCTGGGTTTCATATTCATAccc  <  1:449325/65‑1 (MQ=255) aCATCCGGCTGCATCCGCGAGCGGGCGTCATTTTCGATGCTGACCTGGGTTTCATATTCATAccc  <  1:471044/65‑1 (MQ=255) aCATCCGGCTGCATCCGCGAGCGGGCGTCATTTTCGATGCTGACCTGGGTTTCATATTCATAccc  <  1:503176/65‑1 (MQ=255) aCATCCGGCTGCATCCGCGAGCGGGCGTCATTTTCGATGCTGACCTGGGTTTCATATTCATAccc  <  1:562866/65‑1 (MQ=255) aCATCCGGCTGCATCCGCGAGCGGGCGTCATTTTCGATGCTGACCTGGGTTTCATATTCATAccc  <  1:566735/65‑1 (MQ=255) aCATCCGGCTGCATCCGCGAGCGGGCGTCATTTTCGATGCTGACCTGGGTTTCATATTCATAccc  <  1:570327/65‑1 (MQ=255) aCATCCGGCTGCATCCGCGAGCGGGCGTCATTTTCGATGCTGACCTGGGTTTCATATTCATAccc  <  1:615146/65‑1 (MQ=255) aCATCCGGCTGCATCCGCGAGCGGGCGTCATTTTCGATGCTGACCTGGGTTTCATATTCATAccc  <  1:787195/65‑1 (MQ=255) aCATCCGGCTGCATCCGCGAGCGGGCGTCATTTTCGATGCTGACCTGGGTTTCATATTCATAccc  <  1:870806/65‑1 (MQ=255) aCATCCGGCTGCATCCGCGAGCGGGCGTCATTTTCGATGCTGACCTGGGTTTCATATTCATAccc  <  1:91592/65‑1 (MQ=255) aCATCCGGCTGCATCCGCGAGCGGGCGTCATTTTCGATGCTGACCTGGGTTTCATATTCATAccc  <  1:957215/65‑1 (MQ=255) aCATCCGGCTGCATCCGCGAGCGGGCGTCATTTTCGATGCTGACCTGGGTTTCATATTCATAccc  <  1:1191184/65‑1 (MQ=255) aCATCCGGCTGCATCCGCGAGCGGGCGTCATTTTCGATGCTGACCTGGGTTTCATATTCATAccc  <  1:1293035/65‑1 (MQ=255) aCATCCGGCTGCATCCGCGAGCGGGCGTCATTTTCGATGCTGACCTGGGTTTCATATTCATAccc  <  1:1330678/65‑1 (MQ=255) aCATCCGGCTGCATCCGCGAGCGGGCGTCATTTTCGATGCTGACCTGGGTTTCATATTCATAccc  <  1:1370330/65‑1 (MQ=255) aCATCCGGCTGCATCCGCGAGCGGGCGTCATTTTCGATGCTGACCTGGGTTTCATATTCATAccc  <  1:1629280/65‑1 (MQ=255) aCATCCGGCTGCATCCGCGAGCGGGCGTCATTTTCGATGCTGACCTGGGTTTCATATTCATAccc  <  1:1375462/65‑1 (MQ=255) aCATCCGGCTGCATCCGCGAGCGGGCGTCATTTTCGATGCTGACCTGGGTTTCATATTCATAccc  <  1:1388675/65‑1 (MQ=255) aCATCCGGCTGCATCCGCGAGCGGGCGTCATTTTCGATGCTGACCTGGGTTTCATATTCATAccc  <  1:1259474/65‑1 (MQ=255) aCATCCGGCTGCATCCGCGAGCGGGCGTCATTTTCGATGCTGACCTGGGTTTCATATTCATAccc  <  1:1224424/65‑1 (MQ=255) aCATCCGGCTGCATCCGCGAGCGGGCGTCATTTTCGATGCTGACCTGGGTTTCATATTCATAccc  <  1:1193309/65‑1 (MQ=255) aCATCCGGCTGCATCCGCGAGCGGGCGTCATTTTCGATGCTGACCTGGGTTTCATATTCATAccc  <  1:1504311/65‑1 (MQ=255) aCATCCGGCTGCATCCGCGAGCGGGCGTCATTTTCGATGCTGACCTGGGTTTCATATTCATAccc  <  1:1507710/65‑1 (MQ=255) aCATCCGGCTGCATCCGCGAGCGGGCGTCATTTTCGATGCTGACCTGGGTTTCATATTCATAccc  <  1:1172714/65‑1 (MQ=255) aCATCCGGCTGCATCCGCGAGCGGGCGTCATTTTCGATGCTGACCTGGGTTTCATATTCATAccc  <  1:1526063/65‑1 (MQ=255) aCATCCGGCTGCATCCGCGAGCGGGCGTCATTTTCGATGCTGACCTGGGTTTCATATTCATAccc  <  1:152718/65‑1 (MQ=255) aCATCCGGCTGCATCCGCGAGCGGGCGTCATTTTCGATGCTGACCTGGGTTTCATATTCATAccc  <  1:1072081/65‑1 (MQ=255) aCATCCGGCTGCATCCGCGAGCGGGCGTCATTTTCGATGCTGACCTGGGTTTCATATTCATAccc  <  1:15314/65‑1 (MQ=255) aCATCCGGCTGCATCCGCGAGCGGGCGTCATTTTCGATGCTGACCTGGGTTTCATATTCATAccc  <  1:1554554/65‑1 (MQ=255) aCATCCGGCTGCATCCGCGAGCGGGCGTCATTTTCGATGCTGACCTGGGTTTCATATTCATAccc  <  1:1561732/65‑1 (MQ=255) aCATCCGGCTGCATCCGCGAGCGGGCGTCATTTTCGATGCTGACCTGGGGTTCATATTCATAccc  <  1:429448/65‑1 (MQ=255) aCATCCGGCTGCATCCGCGAGCGGGCGTCATTTTCGATGCTGACCTGGGGTTCATATTCATAccc  <  1:1283929/65‑1 (MQ=255) aCATCCGGCTGCATCCGCGAGCGGGCGTCATATTCGATGCTGACCTGGGTTTCATATTCATAccc  <  1:1281683/65‑1 (MQ=255) aCATCCGGCTGCATCCGCGAGCGGGCGTCATATTCGATGCTGACCTGGGTTTCATATTCATAccc  <  1:1485273/65‑1 (MQ=255) aCATCCGGCTGCATCCGCGAGCGGGCGGCATTTTCGATGCTGACCTGGGTTTCATATTCATAccc  <  1:549909/65‑1 (MQ=255) aCAGCCGGCTGCATCCGCGAGCGGGCGTCATTTTCGATGCTGACCTGGGTTTCATATTCATAccc  <  1:267816/65‑1 (MQ=255)  cATCCGGCTGCATCCGCGAGCGGGCGTCATTTTCGATGCTGACCTGGGTTTCATATTCATAccc  <  1:462965/64‑1 (MQ=255)  cATCCGGCTGCATCCGCGAGCGGGCGTCATTTTCGATGCTGACCTGGGTTTCATATTCATAccc  <  1:1427743/64‑1 (MQ=255)  cATCCGGCTGCATCCGCGAGCGGGCGTCATTTTCGATGCTGACCTGGGTTTCATATTCATAccc  <  1:1520088/64‑1 (MQ=255)  cATCCGGCTGCATCCGCGAGCGGGCGTCATTTTCGATGCTGACCTGGGTTTCATATTCATAccc  <  1:178054/64‑1 (MQ=255)  cATCCGGCTGCATCCGCGAGCGGGCGTCATTTTCGATGCTGACCTGGGTTTCATATTCATAccc  <  1:939158/64‑1 (MQ=255)  cATCCGGCTGCATCCGCGAGCGGGCGTCATTTTCGATGCTGACCTGGGTTTCATATTCATAccc  <  1:1046992/64‑1 (MQ=255)                  cgAGCGGGCGTCATTTTCGATGCTGACCTGGGTTTCATATTCATAccc  <  1:958210/48‑1 (MQ=255)                     gCGGGCGTCATTTTCGATGCTGACCTGGGTTTCATATTCATAccc  <  1:260929/45‑1 (MQ=255)                                                                 | ACATCCGGCTGCATCCGCGAGCGGGCGTCATTTTCGATGCTGACCTGGGTTTCATATTCATACCC  >  W3110S.gb/3618621‑3618685

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑