Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	3688864	3689024	161	69 [0]	[0] 7	hdfR	DNA‑binding transcriptional regulator

CCAGTCAGCAGTGAGCTTTCGAATCAGACAACTGGAAAATCAACTGGGTGTGAACCTTTTCACCC  >  W3110S.gb/3688799‑3688863                                                                 | ccAGTCAGCAGTGAGCTTTCGAATCAGATAACTGGAAAATCAACTGGGTGTGAACCTTTTCAccc  >  1:660584/1‑65 (MQ=255) ccAGTCAGCAGTGAGCTTTCGAATCAGACAACTGGAAAATCGACTGGGTGTGAACCTTTTCAccc  >  1:1789747/1‑65 (MQ=255) ccAGTCAGCAGTGAGCTTTCGAATCAGACAACTGGAAAATCAACTGGGTGTGAACCTTTTCAccc  >  1:1798848/1‑65 (MQ=255) ccAGTCAGCAGTGAGCTTTCGAATCAGACAACTGGAAAATCAACTGGGTGTGAACCTTTTCAccc  >  1:1870764/1‑65 (MQ=255) ccAGTCAGCAGTGAGCTTTCGAATCAGACAACTGGAAAATCAACTGGGTGTGAACCTTTTCAccc  >  1:196614/1‑65 (MQ=255) ccAGTCAGCAGTGAGCTTTCGAATCAGACAACTGGAAAATCAACTGGGTGTGAACCTTTTCAccc  >  1:219933/1‑65 (MQ=255) ccAGTCAGCAGTGAGCTTTCGAATCAGACAACTGGAAAATCAACTGGGTGTGAACCTTTTCAccc  >  1:222980/1‑65 (MQ=255) ccAGTCAGCAGTGAGCTTTCGAATCAGACAACTGGAAAATCAACTGGGTGTGAACCTTTTCAccc  >  1:238977/1‑65 (MQ=255) ccAGTCAGCAGTGAGCTTTCGAATCAGACAACTGGAAAATCAACTGGGTGTGAACCTTTTCAccc  >  1:283281/1‑65 (MQ=255) ccAGTCAGCAGTGAGCTTTCGAATCAGACAACTGGAAAATCAACTGGGTGTGAACCTTTTCAccc  >  1:28700/1‑65 (MQ=255) ccAGTCAGCAGTGAGCTTTCGAATCAGACAACTGGAAAATCAACTGGGTGTGAACCTTTTCAccc  >  1:326597/1‑65 (MQ=255) ccAGTCAGCAGTGAGCTTTCGAATCAGACAACTGGAAAATCAACTGGGTGTGAACCTTTTCAccc  >  1:342812/1‑65 (MQ=255) ccAGTCAGCAGTGAGCTTTCGAATCAGACAACTGGAAAATCAACTGGGTGTGAACCTTTTCAccc  >  1:344321/1‑65 (MQ=255) ccAGTCAGCAGTGAGCTTTCGAATCAGACAACTGGAAAATCAACTGGGTGTGAACCTTTTCAccc  >  1:412458/1‑65 (MQ=255) ccAGTCAGCAGTGAGCTTTCGAATCAGACAACTGGAAAATCAACTGGGTGTGAACCTTTTCAccc  >  1:42690/1‑65 (MQ=255) ccAGTCAGCAGTGAGCTTTCGAATCAGACAACTGGAAAATCAACTGGGTGTGAACCTTTTCAccc  >  1:598882/1‑65 (MQ=255) ccAGTCAGCAGTGAGCTTTCGAATCAGACAACTGGAAAATCAACTGGGTGTGAACCTTTTCAccc  >  1:615474/1‑65 (MQ=255) ccAGTCAGCAGTGAGCTTTCGAATCAGACAACTGGAAAATCAACTGGGTGTGAACCTTTTCAccc  >  1:662396/1‑65 (MQ=255) ccAGTCAGCAGTGAGCTTTCGAATCAGACAACTGGAAAATCAACTGGGTGTGAACCTTTTCAccc  >  1:826362/1‑65 (MQ=255) ccAGTCAGCAGTGAGCTTTCGAATCAGACAACTGGAAAATCAACTGGGTGTGAACCTTTTCAccc  >  1:997658/1‑65 (MQ=255) ccAGTCAGCAGTGAGCTTTCGAATCAGACAACTGGAAAATCAACTGGGTGTGAACCTTTTCAccc  >  1:983926/1‑65 (MQ=255) ccAGTCAGCAGTGAGCTTTCGAATCAGACAACTGGAAAATCAACTGGGTGTGAACCTTTTCAccc  >  1:982357/1‑65 (MQ=255) ccAGTCAGCAGTGAGCTTTCGAATCAGACAACTGGAAAATCAACTGGGTGTGAACCTTTTCAccc  >  1:92984/1‑65 (MQ=255) ccAGTCAGCAGTGAGCTTTCGAATCAGACAACTGGAAAATCAACTGGGTGTGAACCTTTTCAccc  >  1:915545/1‑65 (MQ=255) ccAGTCAGCAGTGAGCTTTCGAATCAGACAACTGGAAAATCAACTGGGTGTGAACCTTTTCAccc  >  1:91438/1‑65 (MQ=255) ccAGTCAGCAGTGAGCTTTCGAATCAGACAACTGGAAAATCAACTGGGTGTGAACCTTTTCAccc  >  1:877668/1‑65 (MQ=255) ccAGTCAGCAGTGAGCTTTCGAATCAGACAACTGGAAAATCAACTGGGTGTGAACCTTTTCAccc  >  1:872809/1‑65 (MQ=255) ccAGTCAGCAGTGAGCTTTCGAATCAGACAACTGGAAAATCAACTGGGTGTGAACCTTTTCAccc  >  1:1784896/1‑65 (MQ=255) ccAGTCAGCAGTGAGCTTTCGAATCAGACAACTGGAAAATCAACTGGGTGTGAACCTTTTCAccc  >  1:800835/1‑65 (MQ=255) ccAGTCAGCAGTGAGCTTTCGAATCAGACAACTGGAAAATCAACTGGGTGTGAACCTTTTCAccc  >  1:796480/1‑65 (MQ=255) ccAGTCAGCAGTGAGCTTTCGAATCAGACAACTGGAAAATCAACTGGGTGTGAACCTTTTCAccc  >  1:766097/1‑65 (MQ=255) ccAGTCAGCAGTGAGCTTTCGAATCAGACAACTGGAAAATCAACTGGGTGTGAACCTTTTCAccc  >  1:76127/1‑65 (MQ=255) ccAGTCAGCAGTGAGCTTTCGAATCAGACAACTGGAAAATCAACTGGGTGTGAACCTTTTCAccc  >  1:74766/1‑65 (MQ=255) ccAGTCAGCAGTGAGCTTTCGAATCAGACAACTGGAAAATCAACTGGGTGTGAACCTTTTCAccc  >  1:714069/1‑65 (MQ=255) ccAGTCAGCAGTGAGCTTTCGAATCAGACAACTGGAAAATCAACTGGGTGTGAACCTTTTCAccc  >  1:673822/1‑65 (MQ=255) ccAGTCAGCAGTGAGCTTTCGAATCAGACAACTGGAAAATCAACTGGGTGTGAACCTTTTCAccc  >  1:1158890/1‑65 (MQ=255) ccAGTCAGCAGTGAGCTTTCGAATCAGACAACTGGAAAATCAACTGGGTGTGAACCTTTTCAccc  >  1:1428345/1‑65 (MQ=255) ccAGTCAGCAGTGAGCTTTCGAATCAGACAACTGGAAAATCAACTGGGTGTGAACCTTTTCAccc  >  1:1402505/1‑65 (MQ=255) ccAGTCAGCAGTGAGCTTTCGAATCAGACAACTGGAAAATCAACTGGGTGTGAACCTTTTCAccc  >  1:1366700/1‑65 (MQ=255) ccAGTCAGCAGTGAGCTTTCGAATCAGACAACTGGAAAATCAACTGGGTGTGAACCTTTTCAccc  >  1:1344265/1‑65 (MQ=255) ccAGTCAGCAGTGAGCTTTCGAATCAGACAACTGGAAAATCAACTGGGTGTGAACCTTTTCAccc  >  1:131942/1‑65 (MQ=255) ccAGTCAGCAGTGAGCTTTCGAATCAGACAACTGGAAAATCAACTGGGTGTGAACCTTTTCAccc  >  1:1281553/1‑65 (MQ=255) ccAGTCAGCAGTGAGCTTTCGAATCAGACAACTGGAAAATCAACTGGGTGTGAACCTTTTCAccc  >  1:1271172/1‑65 (MQ=255) ccAGTCAGCAGTGAGCTTTCGAATCAGACAACTGGAAAATCAACTGGGTGTGAACCTTTTCAccc  >  1:120448/1‑65 (MQ=255) ccAGTCAGCAGTGAGCTTTCGAATCAGACAACTGGAAAATCAACTGGGTGTGAACCTTTTCAccc  >  1:1434556/1‑65 (MQ=255) ccAGTCAGCAGTGAGCTTTCGAATCAGACAACTGGAAAATCAACTGGGTGTGAACCTTTTCAccc  >  1:1147566/1‑65 (MQ=255) ccAGTCAGCAGTGAGCTTTCGAATCAGACAACTGGAAAATCAACTGGGTGTGAACCTTTTCAccc  >  1:1136444/1‑65 (MQ=255) ccAGTCAGCAGTGAGCTTTCGAATCAGACAACTGGAAAATCAACTGGGTGTGAACCTTTTCAccc  >  1:1129532/1‑65 (MQ=255) ccAGTCAGCAGTGAGCTTTCGAATCAGACAACTGGAAAATCAACTGGGTGTGAACCTTTTCAccc  >  1:1125961/1‑65 (MQ=255) ccAGTCAGCAGTGAGCTTTCGAATCAGACAACTGGAAAATCAACTGGGTGTGAACCTTTTCAccc  >  1:1082532/1‑65 (MQ=255) ccAGTCAGCAGTGAGCTTTCGAATCAGACAACTGGAAAATCAACTGGGTGTGAACCTTTTCAccc  >  1:1016851/1‑65 (MQ=255) ccAGTCAGCAGTGAGCTTTCGAATCAGACAACTGGAAAATCAACTGGGTGTGAACCTTTTCAccc  >  1:1005898/1‑65 (MQ=255) ccAGTCAGCAGTGAGCTTTCGAATCAGACAACTGGAAAATCAACTGGGTGTGAACCTTTTCAccc  >  1:1594661/1‑65 (MQ=255) ccAGTCAGCAGTGAGCTTTCGAATCAGACAACTGGAAAATCAACTGGGTGTGAACCTTTTCAccc  >  1:1780295/1‑65 (MQ=255) ccAGTCAGCAGTGAGCTTTCGAATCAGACAACTGGAAAATCAACTGGGTGTGAACCTTTTCAccc  >  1:1763240/1‑65 (MQ=255) ccAGTCAGCAGTGAGCTTTCGAATCAGACAACTGGAAAATCAACTGGGTGTGAACCTTTTCAccc  >  1:1686263/1‑65 (MQ=255) ccAGTCAGCAGTGAGCTTTCGAATCAGACAACTGGAAAATCAACTGGGTGTGAACCTTTTCAccc  >  1:1684641/1‑65 (MQ=255) ccAGTCAGCAGTGAGCTTTCGAATCAGACAACTGGAAAATCAACTGGGTGTGAACCTTTTCAccc  >  1:1672697/1‑65 (MQ=255) ccAGTCAGCAGTGAGCTTTCGAATCAGACAACTGGAAAATCAACTGGGTGTGAACCTTTTCAccc  >  1:1608306/1‑65 (MQ=255) ccAGTCAGCAGTGAGCTTTCGAATCAGACAACTGGAAAATCAACTGGGTGTGAACCTTTTCAccc  >  1:1606057/1‑65 (MQ=255) ccAGTCAGCAGTGAGCTTTCGAATCAGACAACTGGAAAATCAACTGGGTGTGAACCTTTTCAccc  >  1:1005231/1‑65 (MQ=255) ccAGTCAGCAGTGAGCTTTCGAATCAGACAACTGGAAAATCAACTGGGTGTGAACCTTTTCAccc  >  1:1560503/1‑65 (MQ=255) ccAGTCAGCAGTGAGCTTTCGAATCAGACAACTGGAAAATCAACTGGGTGTGAACCTTTTCAccc  >  1:1532426/1‑65 (MQ=255) ccAGTCAGCAGTGAGCTTTCGAATCAGACAACTGGAAAATCAACTGGGTGTGAACCTTTTCAccc  >  1:1515100/1‑65 (MQ=255) ccAGTCAGCAGTGAGCTTTCGAATCAGACAACTGGAAAATCAACTGGGTGTGAACCTTTTCAccc  >  1:1508089/1‑65 (MQ=255) ccAGTCAGCAGTGAGCTTTCGAATCAGACAACTGGAAAATCAACTGGGTGTGAACCTTTTCAccc  >  1:1475398/1‑65 (MQ=255) ccAGTCAGCAGTGAGCTTTCGAATCAGACAACTGGAAAATCAACTGGGTGTGAACCTTTTCAccc  >  1:1456164/1‑65 (MQ=255) ccAGTCAGCAGTGAGCTTTCGAATCAGACAACTGGAAAATCAACTGGGTGTGAACCTTTTCAccc  >  1:1438172/1‑65 (MQ=255) acAGTCAGCAGTGAGCTTTCGAATCAGACAACTGGAAAATCAACTGGGTGTGAACCTTTTCAccc  >  1:1767847/2‑65 (MQ=255)                                                                 | CCAGTCAGCAGTGAGCTTTCGAATCAGACAACTGGAAAATCAACTGGGTGTGAACCTTTTCACCC  >  W3110S.gb/3688799‑3688863

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑